Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4 105 6e-18 seq7 102 7e-17 seq8 93.3 4e-14 seq6 93.3 4e-14 seq1 84.2 2e-11 >seq4 Length=56582383 Score = 105 bits (116), Expect = 6e-18 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| ||||| || |||||||| ||||| || || || || Sbjct 35111160 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGCCTATCCTC 35111219 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| ||||| || |||||||||||||| || ||| | || ||||||| | Sbjct 35111220 CAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGAGGGATCCCT-TCTTTGT-CT 35111277 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| | | | | | | | | | | |||||| |||||| || | ||||| | Sbjct 35111278 TGAATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTCTCCACCTCAAGGGTGATTGTC 35111337 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||||| || || || || |||||||||||||||| Sbjct 35111338 TTTCCTGTGAGAGTCTTCACAAAGATTTGCATCT 35111371 Score = 93.3 bits (102), Expect = 4e-14 Identities = 168/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||| ||||| || || | ||| | || || ||| || ||||| || Sbjct 31288204 AAATATCTGCATGCCACCTCTCAATCGCAGCACAAGGTGAAGGGTGGATTCCTTTTGGAT 31288263 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 || ||||| ||||| || || | || || | ||||| || ||||||||||| | || Sbjct 31288264 GTTGTAATCCGCAAGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAATATAAGCCTTTG 31288323 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTAT 39223 ||| |||| || | | || |||| | ||| | | | || | ||| | | | |||| Sbjct 31288324 CTGATCGGGAGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTAACGTTGTCTATGGTAT 31288382 Query 39224 CGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 | |||||| || | |||||| |||| || |||| ||||| ||||||||||||| Sbjct 31288383 CAGAACTCTCCACCTCGAGGGTGATAGTTTTGCCAGTCAATGTTTTCACAAAGATTTGCA 31288442 Query 39284 TCT 39286 ||| Sbjct 31288443 TCT 31288445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| || ||||| || |||||||| ||||| || || | || || Sbjct 35101819 CACCAAATGGAGGGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTACGCCCATCCTC 35101878 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 | ||| ||||| ||||| || |||||||||||||| |||||| | | || |||| | Sbjct 35101879 CAACTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGG-ATTCCTTCCTTGT-CT 35101936 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| ||| || | | | | | | | ||||| ||| || || | ||||| | Sbjct 35101937 TGAATTTTTGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTC 35101996 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || || || || ||||| ||||||||||||| || Sbjct 35101997 TTGCCAGTGAGGGTCTTAACGAAGATTTGCATCTATA 35102033 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| || || || |||||||| ||||| || || | || || Sbjct 36294080 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGCCCATCCTC 36294021 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| || || ||||| || |||||||||||||| |||||| | | || |||| | Sbjct 36294020 CAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGG-ATTCCTTCCTTGT-CT 36293963 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| | | || | | | | | | | ||||| ||| || || | ||||| | Sbjct 36293962 TGAATCTTTGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTC 36293903 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 ||||| || || || ||||| ||||||||||||| || Sbjct 36293902 TTTCCAGTGAGGGTCTTAACGAAGATTTGCATCTATA 36293866 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || ||| || ||||| ||||||||||| ||||| || | | | Sbjct 31287545 CGCAAAACCAAATGCAGAGTGGATTCCTTTTGGATATTATAATCAGCAAGGGTCCTTCCA 31287604 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || ||||| ||||| || ||||| ||||| | |||||| || | || | || || || Sbjct 31287605 TCTTCAAGTTGTTTCCCTGCAAAGATAAGTCTCTGCTGATCAGGAGGGATGCCTTCCTTA 31287664 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| || || ||| | | | | ||||| ||| || |||| || ||| Sbjct 31287665 TCCTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCCAAAGTAATA 31287724 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || || || || ||||| |||||||| Sbjct 31287725 GTTTTTCCGGTAAGGGTCTTTACAAAAATTTGCAT 31287759 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || | | ||||||||| || || || || || || |||||||| || Sbjct 31260482 CCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAGCT 31260541 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | | || || || ||||| || ||||| ||||| | |||||| || | || Sbjct 31260542 AGGGTTCTTCCATCCTCGAGTTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCAGGAGGG 31260601 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||||||| || || |||| | | | ||||| || ||||| Sbjct 31260602 ATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTATCAATTGTATCTGATGATTCCACC 31260661 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | ||||| |||| || |||| ||||| || ||||||||||||| Sbjct 31260662 TCAAGGGTGATGGTTTTACCAGTCAATGTTTTCACGAAGATTTGCATCT 31260710 >seq7 Length=49172423 Score = 102 bits (112), Expect = 7e-17 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| ||| ||||| || || ||||| ||||| || || |||| || Sbjct 47989831 CACCAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCTGCAAGGGTACGCCCGTCTTC 47989772 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| ||||| || |||||||||||||| || ||| | || || |||| | Sbjct 47989771 CAGCTGCTTGCCGGCAAAAATTAGACGCTGCTGGTCTGGAGGGATCCCT-TCCTTGT-CT 47989714 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| | | | | | | | | | | |||||| |||||| || | ||||| | Sbjct 47989713 TGAATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTCTCCACCTCAAGGGTGATTGTC 47989654 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||||| || || || || |||||||||||||||| Sbjct 47989653 TTTCCTGTGAGAGTCTTCACAAAGATTTGCATCT 47989620 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || || | ||| || || |||||| || || ||||||||||| | ||||| | Sbjct 47990064 CGCAAAACGAGATGAAGAGTTGACTCTTTCTGGATGTTATAATCGGCCAATGTTCTGCCA 47990005 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || ||||||||||| || ||||| || || | ||||||||| |||||| | || || || Sbjct 47990004 TCTTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGGATCCCT-TCCTT 47989946 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| || || |||| | | | |||||| |||||| || | ||||| Sbjct 47989945 GTCTTGAATCTTGGCCTTGACATTGTCAATTGTATCGGAGCTCTCCACCTCAAGAGTGAT 47989886 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||||||| || || || || ||||||||||||||| Sbjct 47989885 TGTTTTTCCTGTGAGAGTCTTCACAAAGATTTGCATC 47989849 >seq8 Length=45569985 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| || ||||| || |||||||| ||||| || || | || || Sbjct 6167922 CACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTACGCCCATCCTC 6167863 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| ||||| || || ||||||||||| |||||| | | || |||| | Sbjct 6167862 CAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGTGGG-ATTCCTTCCTTGT-CT 6167805 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| ||| || | | | | | | | ||||| ||| || || | ||||| | Sbjct 6167804 TGAATTTTTGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTC 6167745 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || || || || ||||| ||||||||||||| || Sbjct 6167744 TTGCCAGTGAGGGTCTTAACGAAGATTTGCATCTGTA 6167708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||| ||||| || |||||||| ||||| || || | || || Sbjct 35000613 CACCAAATGAAGGGTAGACTCCTTTTGGATGTTATAATCCGCAAGGGTACGCCCATCCTC 35000672 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTC 39191 || |||||||| ||||| || ||||||||||| || |||||| | || || ||||| Sbjct 35000673 CAGTTGTTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGGATCCCT-TCCTTGTC 35000729 >seq6 Length=35275713 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||||||||| || || ||||||||||| |||| | || |||||||| || || ||||| Sbjct 24039503 CTCTTTTTGGATGTTGTAATCGGCAAGAGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAA 24039444 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || | ||||||||| | ||| | | ||| |||||| || || ||||| | Sbjct 24039443 AATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGCTTTGACATT 24039384 Query 39213 CGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTT 39269 | | ||||| ||| |||||| || | ||||| | ||||| || || || || Sbjct 24039383 ATCAATAGTATCAGAGCT---CTCCACCTCAAGGGTGATTGTCTTTCCAGTGAGAGTCTT 24039327 Query 39270 AACAAAGATTTGCATC 39285 || |||||||||||| Sbjct 24039326 GACGAAGATTTGCATC 24039311 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| ||||| || || ||||| ||||| || || | || || Sbjct 24039293 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTC 24039234 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 ||||| ||||| ||||| || |||||||||||||| |||||| Sbjct 24039233 CAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGG 24039191 >seq1 Length=52991155 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| |||||||| || ||||||||||| ||||| |||| | | || || | ||| Sbjct 28610795 ATGAAGCGTACTCTCTTTCTGGATATTATAATCCGCAAGAGTTCTTCCATCTTCCAACTG 28610736 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || ||||| || | || ||||| || | || | || || ||||| || || Sbjct 28610735 CTTCCCTGCAAAGATCAATCGTTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGAATCTT 28610676 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | || | ||| | | | || || || || || |||| || || |||| || | Sbjct 28610675 CGCCTTCA-CGTTGTCGATTGTGTCAGAAGATTCAACTTCCAGGGTTATGGTTTTCCCTG 28610617 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| |||||||||||||| Sbjct 28610616 TTAGGGTTTTGACAAAGATTTGCAT 28610592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429534150864731