Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq7 208 7e-49 seq276 205 8e-48 seq8 192 5e-44 seq1 183 3e-41 seq4 82.4 7e-11 >seq7 Length=49172423 Score = 208 bits (230), Expect = 7e-49 Identities = 591/898 (66%), Gaps = 15/898 (2%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||| || ||||||||||| || |||| | ||||| ||||| |||||||| Sbjct 10196802 ACACGCTTCTCAAAGAAATTAGTATTCCCTTGAAGAGAAATCAAATCCATCCAATCAAAC 10196861 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| | || ||| |||||||| ||| | | | |||| ||||| ||| Sbjct 10196862 GGATTCTGAACATTATAAACCTTTTCACAACCAAGATCACCCAATAATCTATCAGCAACA 10196921 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT-CTCACAGGTAGCGC 4450 || || ||||| ||||| | | | | || || |||| || | || ||| || || Sbjct 10196922 AACTCAATATAAGTACTCATCAATCCACCATTCATCCCAACCAACGCGCA-AGGAAGAGC 10196980 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || | ||| || |||| || || || | | || || || | || Sbjct 10196981 ATAGCAGACAAATTCACGTTCAATTTCAACAGCATTGCATACAATTTCCTTCACACGCTC 10197040 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | || | |||| |||| || | | || ||||| ||||||||||| |||| ||| Sbjct 10197041 TGAAGTTAGTTTCTTTAGTAGAAGTGAGTATAACAAACAAGCAAAATCACAGTGCAGACC 10197100 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 |||||| | ||| || ||||| || || ||||| || ||||||||||| | |||||| Sbjct 10197101 TTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCTGGCATTAAACCGCGCTTTTT 10197160 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 | ||| || || ||| ||| || || ||||| || |||||||| ||||| || Sbjct 10197161 CAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAATTCCTTCTACACAAGCAAATGC 10197220 Query 4691 TACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGC 4750 || | || | || || | |||| | ||||||||| | |||||| | ||| Sbjct 10197221 AACGATTCTTTCAGCAAAAGAA-TCGCTTGAA--TCAATCCATTTCATTGCCCAATCAGC 10197277 Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCA----A 4806 |||||| | || |||||||| | || || | |||||| | | |||||| | Sbjct 10197278 CTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAATAAGCGATTCTTTTCAGCAGA 10197337 Query 4807 ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTA 4866 || | ||| ||||| || || || || ||| ||||| |||||||| || ||||| | Sbjct 10197338 ATCG--CTT--ATATATGTTTCAATGAGAAGGGAGTACATCTCAGAATGGATGTTTTCAA 10197393 Query 4867 TAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 | ||||| || || || || ||| | ||||| | | ||| ||||| || |||| Sbjct 10197394 TTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATTTGGACTTCTTTCATGAATC 10197453 Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAG 4986 || | | | ||||| || || ||||| ||| || || || || | ||| |||| Sbjct 10197454 TTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGCGAAGAAGGCAAGAACGTGAG 10197513 Query 4987 ATATAAAGTACTGTTCGTCAGGCT-TAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045 | || |||| ||||| | | || | || || |||||||| | ||| | | | Sbjct 10197514 AGATGAAGTGGCGTTCGCC-GTCTGTGAGGTTGTTCCAGTGCTTGAGATCGGAGGAAAGA 10197572 Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCA 5105 ||||||||||| | ||||| || || ||||| |||||||||||||| ||| || | Sbjct 10197573 TCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACATTTCCCAGATTTTT 10197632 Query 5106 GGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGGTGTAAGAAGCGGTTCTT 5163 || || || || || | ||| |||| || ||| |||| ||||| ||||||| Sbjct 10197633 GGGTATTGGATTGGGAACATGCAGAATCGGTCTGGGTTTGGTGCGAGAAGTGGTTCTT 10197690 >seq276 Length=24472 Score = 205 bits (226), Expect = 8e-48 Identities = 426/627 (68%), Gaps = 13/627 (2%) Strand=Plus/Minus Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 || ||||| ||||||||||| |||| ||||||||| | ||| || ||||| || || Sbjct 23016 AACAAACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAAT 22957 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 ||||| || ||||||||||| | |||||| | ||| || || ||| ||| || || Sbjct 22956 GTTAACCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAG 22897 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 ||||| || |||||||| ||||| || || | || | || || | |||| Sbjct 22896 AAGAAAATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAA-TCGCTTGA 22838 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781 | ||||||||| | |||||| | ||| |||||| | || |||||||| | || Sbjct 22837 A--TCAATCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATT 22780 Query 4782 GCGTTAAATAATTTACTTTTTTCA----AATGGGTCTTGAATATAAGTGTCTATTAGTAG 4837 || | |||||| | | |||||| ||| | ||| ||||| || || || || || Sbjct 22779 GCATGAAATAAGCGATTCTTTTCAGCAGAATCG--CTT--ATATATGTTTCAATGAGAAG 22724 Query 4838 GCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGC 4897 | ||||| |||||||| || ||||| || ||||| || || || || ||| | || Sbjct 22723 GGAGTACATCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGC 22664 Query 4898 TTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTC 4957 ||| | | ||| ||||| || |||||| | | | ||||| || || ||||| Sbjct 22663 TTCGGAGATTTGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTC 22604 Query 4958 ACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCT-TAAGTT 5016 ||| || || || || | ||| ||||| || |||| ||||| | | || | || | Sbjct 22603 TGAGGCGGCGAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCC-GTCTGTGAGGT 22545 Query 5017 TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTT 5076 | |||||||| | ||| | | |||||||||||| | ||||| || || |||| Sbjct 22544 TGTTCCAGTGCTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTT 22485 Query 5077 CCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGT 5136 | |||||||||||||| ||| || | || || || || || | ||| |||| || Sbjct 22484 CGGCTTTTTTGTACATTTCCCAGATTTTTGGGTATTGGATTGGGAACATGCAGAATCGGT 22425 Query 5137 TGTCGTTAGGTGTAAGAAGCGGTTCTT 5163 ||| |||| ||||| ||||||| Sbjct 22424 CTGGGTTTGGTGCGAGAAGTGGTTCTT 22398 >seq8 Length=45569985 Score = 192 bits (212), Expect = 5e-44 Identities = 595/902 (66%), Gaps = 23/902 (3%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||| || |||||||| ||||| || | | |||||| ||||| ||||||| Sbjct 25025294 ACGCGCTTCTCAAAGAAATTGGTTTTCCCCTGAAGCGAAATCAAATCCATCCAATCAAAT 25025353 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| | || ||| ||| ||||| || | | | || | ||||| ||| Sbjct 25025354 GGATTCTGAACATTATAAACTTTCTCACAACCAAGCTCACCCAATAACCTATCAGCAACA 25025413 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT-CTCACAGGTAGCGC 4450 || || |||||||| ||||| | ||| | ||| || |||| || | || ||| ||||| Sbjct 25025414 AACTCAATATACTGACTCATCAATTCACCGTTCATCCCAACCAACGCGCA-AGGAAGCGC 25025472 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTT--ATTTTA 4508 || | |||||| ||| || || || || || | ||||| | Sbjct 25025473 GTCGCATACAAACTCCCTTTCAATCTCAACCGCATCAC-GAACA-ATCTTCACCACGCGC 25025530 Query 4509 TCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAA 4567 ||| || |||| | || | || | | | || ||||| ||||||||||| || || Sbjct 25025531 TCTGTACTCAGTTTCTG-ACGCAATAGCGAGTATAACAAACAAGCAAAATCACAGTGTAA 25025589 Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627 |||||||| | ||| || ||||| || || |||||||| ||||||||||| | || Sbjct 25025590 GCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTTAATCCCGGCATTAAACCGCGTTT 25025649 Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 ||| | ||| || || || || || || ||||| || ||||| || || || Sbjct 25025650 TTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAGAAAATTCCTTCAACACAAGCGAA 25025709 Query 4688 CGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747 || || | || | || || | |||| | |||||||| || ||||| | Sbjct 25025710 AGCAACGATTCTTTCTGCAAAAGAA-TCGCTTGAA--TCGATCCATTTCAAAGCCCAATC 25025766 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCA-- 4805 |||||| || || ||||||||||||| || |||| ||||||| | | |||||| Sbjct 25025767 AGCTTTCTTAGCAATACACGGAATTGTGTCAATTGCGTGAAATAATCGATTCTTTTCAGC 25025826 Query 4806 --AATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTT 4863 ||| | ||| ||||| || || | || || |||||| || || || || |||| Sbjct 25025827 AGAATCG--CTT--ATATACGTTTCGAGGAGAAGAGAATACATCTCTGAGTGGATGTTTT 25025882 Query 4864 CTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAA 4922 | ||||| || ||||| ||||| |||||| | ||||| | | ||||||||| || Sbjct 25025883 CAATAGCGATTTGAAACCCGTAGAAAGCA-CGCGCTTCAGAGATTTGAACTTCTTTCATG 25025941 Query 4923 AATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACA 4982 |||||| | | | |||||| || |||||||| ||| || || || || | | Sbjct 25025942 AATCTTCCGGCGAGATTTTCGAGGACGATACCGTCGGAGGCGGCGAAGAAGGCGAGGATG 25026001 Query 4983 TGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTT 5042 ||||| || |||| ||||| | | || || |||||||| | | ||| | Sbjct 25026002 TGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTGTTCCAGTGTTGAAGATCGGAGGAA 25026061 Query 5043 AAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATA 5102 | ||| |||||||| | ||||| || || ||||| |||||||||||||| ||| || Sbjct 25026062 AGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTTTTGTACATTTCCCAGATT 25026121 Query 5103 TCAGGATACTGAATCGGAAGTATGACA-AATCTGTTGTCGTTAGGTGTAAGAAGCGGTTC 5161 | || || || || || | || ||| |||| || ||| || | ||||| ||||| Sbjct 25026122 TTTGGGTATTGGATTGGGAACAT-ACAGAATCGGTCTGGGTTTGGAGCGAGAAGAGGTTC 25026180 Query 5162 TT 5163 || Sbjct 25026181 TT 25026182 >seq1 Length=52991155 Score = 183 bits (202), Expect = 3e-41 Identities = 583/897 (65%), Gaps = 13/897 (1%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||| || || ||||| ||||| || | | |||||| |||||| |||||||| Sbjct 19457797 ACGCGCTTCTCAAAAAAATTGGTTTTTCCCTGAAGCGAAATCAATTCCATCCAATCAAAC 19457738 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| | |||||| |||||||| || | | | || | ||||| ||| Sbjct 19457737 GGATTCTGAACATTGTAAACCTTTTCACAACCAAGCTCACCCAATAACCTATCAGCAACA 19457678 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT-CTCACAGGTAGCGC 4450 || || |||||| ||||| | | | || || |||| || | || ||| ||||| Sbjct 19457677 AACTCAATATACGTACTCATCAAACCCCCATTCATCCCAACCAACGCGCA-AGGAAGCGC 19457619 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || || |||||| ||| || || || || | || ||||| | || Sbjct 19457618 GTGGCACACAAACTCCCTTTCAATTTCAACAGCATCACAAACAATTTCTTTCACGCGCTC 19457559 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | | | | || ||| || | | || ||||| || |||||||| ||||| || Sbjct 19457558 TGAACTTAGCTTCTTTCGTAGAAGTGAGTATAACAAACAAGCGAAATCACAGTGCAATCC 19457499 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 |||||| | ||| || ||||| || || |||||||| ||||||||||| | |||||| Sbjct 19457498 TTCGTCGCGTGAAATAAGCTCGTTTGAGAAGGTTAATCCCGGCATTAAACCGCGCTTTTT 19457439 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 | ||| || || || || || || || || || ||||| || |||||||| Sbjct 19457438 CAACCAGAAAATCGCACAGAAGCTTCCGGAGAAAAAGATTCCTTCAACACAAGCAAACGC 19457379 Query 4691 TACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGC 4750 || | || | || || | |||| | |||||||| | ||||| | ||| Sbjct 19457378 AACGATTCTTTCTGCAAAAGAA-TCGCTTGAA--TCGATCCATTTCATCGCCCAATCAGC 19457322 Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCA----A 4806 ||| ||| | || |||||||| | || || | |||||| | | |||||| | Sbjct 19457321 TTTCTTCGCGATACATGGAATTGTTTCAATTGCATGAAATAAGCGATTCTTTTCAGCGGA 19457262 Query 4807 ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTA 4866 || | ||| ||||| || || | || || |||||| ||||| || || ||||| | Sbjct 19457261 ATCG--CTT--ATATACGTTTCGAGGAGAAGAGAATACATCTCAGAGTGGATGTTTTCAA 19457206 Query 4867 TAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 | |||||||| || ||||| ||| | ||||| | ||||| | ||| || ||||| Sbjct 19457205 TTGCAATCTGGAAACCGTAGAAGGCACGTGCTTCAGAGACTTGGATTTCTTTCATAAATC 19457146 Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAG 4986 | | | | ||||| || || ||||| ||| || || || || | ||||||| Sbjct 19457145 TACCGGCGAGATTTTCAAGGACGATGCCGTCGGAGGCAGCGAAGAAGGCGAGGACATGAG 19457086 Query 4987 ATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAAT 5046 | || |||| ||||| | | || |||| |||||| | ||| | | || Sbjct 19457085 AGATGAAGTGGCGTTCGCCGTCGGTGAGGTTTTGCCAGTGCTTGAGATCGGAGGAAAGAT 19457026 Query 5047 CAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAG 5106 | ||||||||| | ||||| || || ||||| |||||||||||||| ||| || | | Sbjct 19457025 CGACTTCTTCAGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACATTTCCCAGATTTTTG 19456966 Query 5107 GATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGGTGTAAGAAGCGGTTCTT 5163 | || || || || | ||| |||| || ||| || | |||||| ||||||| Sbjct 19456965 GGTATTGGATTGGGAACATGCAGAATCGGTCTGGGTTTGGGGCAAGAAGGGGTTCTT 19456909 >seq4 Length=56582383 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||||||||| || | ||| |||||||| || || || || || || || | Sbjct 48679912 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGCTCATTTGAGAATGTCAGA 48679971 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 || |||||||| ||||||||||||||||||||||| || Sbjct 48679972 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATGGC 48680009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427038217393271