Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq813 95.1 4e-15 seq1916 91.5 5e-14 >seq813 Length=5840 Score = 95.1 bits (104), Expect = 4e-15 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 3691 CTGATCCAAGTCGGCTACGGCGAGCGCGACGGCCAGGCGCCCCGCGTCCCCGGGCTCGAC 3750 |||||| || ||||| |||||||| || ||||||| ||| ||| || | |||| Sbjct 2402 CTGATCACGGTTGGCTATGGCGAGCGGGAAGGCCAGGAGCCTCGCACCCAGTCGATCGAG 2343 Query 3751 AAGCCCCTCGGCACGGTGGTCGCCGGCGGCATCAAGCACGCGGTCGCTGCCGCTCACCTG 3810 |||||||||| |||| ||||||||||||| | ||||| ||| ||| || || || | Sbjct 2342 CAGCCCCTCGGGACGGCGGTCGCCGGCGGCGTGAAGCAGGCGATCGTCGCAGCGCATATC 2283 Query 3811 GTCAAGTTCCGC-TTCGACGCCACCGGCGCCCCGGTCGACCAGCCGATGCCGAC 3863 ||||||||| | || | | | |||||| || | || |||||||||| || Sbjct 2282 ACGAAGTTCCGCACTGGAAG-CTCGGGCGCCGCGATGAACGAGCCGATGCCCAC 2230 >seq1916 Length=1250 Score = 91.5 bits (100), Expect = 5e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 5189 ATGAAAGAACGTCCGATCCTATTCAGCGGGCCGATGGTTCGAGCCATCCCGGAAGGCCGG 5248 ||||| ||||| |||||||| ||||| || |||||||| || || |||| ||||||||| Sbjct 66 ATGAAGGAACGCCCGATCCTCTTCAGTGGCCCGATGGTGCGCGCGATCCTCGAAGGCCGG 125 Query 5249 AAGACGGTCACGCGCCGAGTCGTGAAGCCGCAGCC 5283 |||||| ||||| || || ||||||| ||||| Sbjct 126 AAGACGCAAACGCGTCGTGTGGTGAAGCTTCAGCC 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160459832649630