Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 271 1e-67 seq276 152 7e-32 seq7 152 7e-32 seq8 105 9e-18 seq4 87.8 2e-12 >seq3 Length=55515152 Score = 271 bits (300), Expect = 1e-67 Identities = 635/951 (67%), Gaps = 8/951 (1%) Strand=Plus/Plus Query 77679 GCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCG 77738 || || ||||| || ||||| || || ||| | | | | ||| || |||||||| Sbjct 2060469 GCAATTGATGCAAGGTTACACACAGCAGTCTCTGTTGGACTTGTATACTGGATTATCTCA 2060528 Query 77739 GTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCAT 77798 || || ||||| | || || ||||||||||| || |||||||| || ||||||| Sbjct 2060529 GTGCACAGATTTGATGACTTAATTGTGCCCAGATTCTGCTGGTTGCTTTTCCTATTGCAA 2060588 Query 77799 GAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTC 77858 | |||||| |||| || | ||| | || ||||| |||||||| | | ||| | | Sbjct 2060589 GTATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAAATTGCAAAC 2060648 Query 77859 CAGACGACTCTA-GCTTTTATCATAGATTT-GTATCGCCTCTCTCTTTCATATTGAGTAT 77916 || | || || |||| | || ||| | | ||| || ||||||| ||||| | Sbjct 2060649 CACA-GAGTCCGTGCTTGAACAATCTTTTTTGCTTTTCCTG-CTTTTTCATACTGAGTGT 2060706 Query 77917 ATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACA 77976 | ||| |||||||| || |||||| ||| |||| ||||| |||||| ||||| | Sbjct 2060707 ACAGCTTATCAAATTCTTCACCCCAACAATCTGCCAAACCAGGTGCTTCATTGGGGCAGA 2060766 Query 77977 TCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAG 78036 || ||||| || ||||| | | ||| || ||||||||||||||| | ||| || | Sbjct 2060767 ACAGGGACCATTCCCCATCGCTCAGAGCTCTTTCCATAAAGAGATCAGGCACCCAAAGGG 2060826 Query 78037 CAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAA 78096 | ||||| |||||| | | || ||||| ||||| ||| |||| | || || | Sbjct 2060827 CGTAAAATAAATCTCGAGCACGTTGCTCTTCCTTTCCATGATTTATTTTCAATTCCAGGA 2060886 Query 78097 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTAT 78156 | || | ||||||| ||||||||| || | || | || | | | || | || Sbjct 2060887 AGTCAAATATATCAGCATGCCATGGCTCCAAGTACACAGCAAAAGCACCTTTCCTCTTGC 2060946 Query 78157 TACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 78216 || |||||||| | ||| | || || | ||| | || | | ||| |||| ||||| Sbjct 2060947 CTCCCCCCTGATCAACATAACGTGCAGTATCATTGAACACACGAAGCATCGGAACAATAC 2061006 Query 78217 CGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGG 78276 | ||||| |||||||||||||| ||| ||||| || || || ||||| || | Sbjct 2061007 CATTAGACGTTCCATTTGTTCCCCGAATGTAACTACCTTGGGCACGTATATTGTGAACAG 2061066 Query 78277 ATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGA 78336 | | || || ||||| || ||| || | ||| || ||||||||||| || | Sbjct 2061067 AAACACCAATCCCTCCAGCAGATTTACTAATGACAGCACACTCCTTCAATGTATCATAAA 2061126 Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 78396 | ||||| ||||| || || ||||| || | || || ||| || ||| | | Sbjct 2061127 TCCCCTCAATACTATCCTCTTTCATGCAAACCAAGAAGCAACTACTCAACTGAGGCCTAG 2061186 Query 78397 CAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGAT 78456 ||||| || || || | ||| ||||| ||||| || |||||| | | ||| | | || Sbjct 2061187 GTGTTCCGGCGTTGAAAAGTGTAGGAGAAGCATGAGTGAACCATCTCTGAGACATGAAAT 2061246 Query 78457 TGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCA 78516 || |||| | ||| ||||| | || || |||||||| || | || | ||| | Sbjct 2061247 GATAAGTTTTGACAGCAGATTCAACATCATCTTTGTGAATTCCAACAGAAACCCTCATTA 2061306 Query 78517 ACATATGCTGAGGTCTTTCAAC--CGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 78574 |||||| ||||||||||| || | || | | | |||||||| || || |||| Sbjct 2061307 TCATATGTTGAGGTCTTTCCACAACCACTCCT--TCAACTTTCAACAGATAAGACCTTTC 2061364 Query 78575 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | ||||| || ||||| || | ||| ||| || || || || || || Sbjct 2061365 TAGGGTTTTGAATCCAAAGTAATCGTAGTCAAAATCCCTATCATAGATTAT 2061415 >seq276 Length=24472 Score = 152 bits (168), Expect = 7e-32 Identities = 409/619 (66%), Gaps = 10/619 (2%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| ||||||||||| || |||||||| || | ||| | ||||| || ||||| Sbjct 23013 AAACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTT 22954 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAA 48256 | || ||||||| || || ||||| | ||| || || || || |||| | || || || Sbjct 22953 AACCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAA 22895 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG 48316 ||| || |||||||| |||||||| | ||| || | || | ||| | || Sbjct 22894 GAAAATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAA---GAATCGCT-TG 22839 Query 48317 TATCCA-CCGTTG---TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372 ||| | || || ||||||||||||||| ||| | ||| || ||||| || || | Sbjct 22838 AATCAATCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTG 22779 Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 ||| ||| | || |||||| ||| | | || || || || | ||| | Sbjct 22778 CATGAAATAAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGT 22719 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 |||| || || || || ||||||||||| || || || || || || | ||||| | Sbjct 22718 ACATCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGG 22659 Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAG 48552 ||| || || || | |||| | | || | ||| ||| || ||||| || | Sbjct 22658 AGATTTGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGG 22599 Query 48553 CAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCC 48612 | || || || || | || || || || | |||| | || || || |||| Sbjct 22598 CGGCGAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCC 22539 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 ||| |||| ||| || | ||| |||||||| || ||||| ||||| || || |||| Sbjct 22538 AGTGCTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTT 22479 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGAT 48732 |||| ||||| | ||| || | ||||||||||||||| || |||| | ||| | Sbjct 22478 TTTTGTACATTTCCCAGATTTTTGGGTATTGGATTGGGAACATGCAGAATCGGTCTGGGT 22419 Query 48733 TTTTTGCAAGGATAGGTTC 48751 || ||| || | ||||| Sbjct 22418 TTGGTGCGAGAAGTGGTTC 22400 >seq7 Length=49172423 Score = 152 bits (168), Expect = 7e-32 Identities = 591/915 (65%), Gaps = 24/915 (3%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| || || ||||| ||||| || |||||||| || |||| | || || Sbjct 10196786 TTTCTGATACTCCCCAACACGCTTCTCAAAGAAATTAGTATTCCCTTGAAGAGAAATCAA 10196845 Query 47909 TTCCATAAAATCAAATGGATTAACTG--CATTATAAAtttttttAAATCCTAATTCTGAA 47966 ||||| ||||||| ||||| ||| ||||||||| |||| | | || | || Sbjct 10196846 ATCCATCCAATCAAACGGATT--CTGAACATTATAAACCTTTTCACAACCAAGATCACCC 10196903 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026 | | |||||| ||||| || || ||||| | |||||| | ||| |||||| || | Sbjct 10196904 AATAATCTATCAGCAACAAACTCAATATAAGTACTCATCAATCCACCATTCATCCCAACC 10196963 Query 48027 A--GTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTA 48084 | | || || ||||| | | ||| || |||| || ||||||| || Sbjct 10196964 AACGCGCAA--GGAAGAGCATAGCAGACAAATTCACGTTCAATTTCAACAGCATTGCATA 10197021 Query 48085 TTATCGATGTTACCGTTTCCTCACTTGGTGGATACA--ACAAATGTTTA-AACATTAAAC 48141 || | || || | || || | | | || || || |||| ||| Sbjct 10197022 CAATTTCCTTCACACGCTCTGAAGTTAGTTTCTTTAGTAGAAGTGAGTATAACA---AAC 10197078 Query 48142 ATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGAC 48201 | ||||||||||| || |||||||| || | ||| | ||||| || ||||| | | Sbjct 10197079 AAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACC 10197138 Query 48202 CGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAAT 48260 | ||||||| || || ||||| | ||| || || || || |||| | || || ||||| Sbjct 10197139 CTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAAGAAA 10197197 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATC 48320 || |||||||| |||||||| | ||| || | || | ||| | || ||| Sbjct 10197198 ATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAA---GAATCGCT-TGAATC 10197253 Query 48321 CA-CCGTTG---TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 | || || ||||||||||||||| ||| | ||| || ||||| || || |||| Sbjct 10197254 AATCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATG 10197313 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 ||| | || |||||| ||| | | || || || || | ||| ||||| Sbjct 10197314 AAATAAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTACAT 10197373 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 || || || || ||||||||||| || || || || || || | ||||| | ||| Sbjct 10197374 CTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGAT 10197433 Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 || || || | |||| | | || | ||| ||| || ||||| || || || Sbjct 10197434 TTGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGC 10197493 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTC 48616 || || || | || || || || | |||| | || || || ||||||| Sbjct 10197494 GAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGTG 10197553 Query 48617 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTT 48676 |||| ||| || | ||| |||||||| || ||||| ||||| || || |||||||| Sbjct 10197554 CTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTT 10197613 Query 48677 ATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTT 48736 ||||| | ||| || | ||||||||||||||| || |||| | ||| ||| Sbjct 10197614 GTACATTTCCCAGATTTTTGGGTATTGGATTGGGAACATGCAGAATCGGTCTGGGTTTGG 10197673 Query 48737 TGCAAGGATAGGTTC 48751 ||| || | ||||| Sbjct 10197674 TGCGAGAAGTGGTTC 10197688 >seq8 Length=45569985 Score = 105 bits (116), Expect = 9e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||||||||| | ||| | ||| || | ||| | || | || ||| |||| ||||||| Sbjct 38673402 CCTCCCTGATCAACATAACGGGCAGTATCATTGAACACACGCAGCATCGGAACAATACCG 38673461 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| |||||||||||||| ||| ||||| ||| || || || || || || Sbjct 38673462 TTAGACGTTCCATTTGTTCCCCGAATGTAACTACCATGGGCACGTATGTTGTGAACAGAA 38673521 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||||||||| ||| || | ||| || ||||||||||| || || Sbjct 38673522 ACACCAATTCCTCCTGCAGATTTACTAATAACAGCACACTCCTTCAATGTATCATAAATC 38673581 Query 78339 CCCTCTATACTGTCATCCATCAT 78361 ||||| ||||| || || |||| Sbjct 38673582 CCCTCAATACTATCCTCTTTCAT 38673604 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 77899 CTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAG 77958 || ||||||| ||||| || | | ||| |||| || |||||| ||| |||| |||| Sbjct 38672924 CTTTTTCATACTGAGTGTACAACTTATCATATTCTTCACCCCAACAATCTGCCAAACCAG 38672983 Query 77959 GGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGA 78018 | |||||| ||||| | || ||||| || || | || ||||| || |||||||| Sbjct 38672984 GTGCTTCATTGGGGCAGAACAGGGACCATTCCCCGTTGCTCTGAACTCTTTCCATAAAGA 38673043 Query 78019 GATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||| | ||| || || |||| |||||| | | |||||||| Sbjct 38673044 GATCAGGCACCCAAAGGGCGTAGAATAAATCTCGAGCACGTTGTTCTTC 38673092 >seq4 Length=56582383 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||||||||| |||||||| || |||||| |||| || || || ||||| ||| Sbjct 48679912 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGCTCATTTGAGAATGTCAGA 48679971 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGC 48238 || ||||||| ||| | ||||| ||||||||||| || Sbjct 48679972 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATGGC 48680009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694649809491680