Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18]
2,187 sequences; 412,924,424 total letters
Query= NC_031091.1
Length=43277
Score E
Sequences producing significant alignments: (Bits) Value
seq547 260 4e-65
seq1311 105 2e-18
>seq547
Length=11458
Score = 260 bits (288), Expect = 4e-65
Identities = 488/701 (70%), Gaps = 36/701 (5%)
Strand=Plus/Plus
Query 9776 GAACTGCCCAGCTACGGTTACCGCCGTGTTTGGGGATTGCTGCGCCGCGCGCGCGAAAAG 9835
|| || || |||||||| |||||||| |||||||| | ||||||||| ||| ||
Sbjct 9531 GAGCTACCGAGCTACGGCTACCGCCGCGTTTGGGGCACGTTGCGCCGCGAGCGGGAGCGC 9590
Query 9836 CAG----TCGCTGCCCGCGATCAACGTAAAACGGGTTTACCGAGTCATGCGTGATCACAA 9891
| | ||||| ||||||| ||| ||||| || || ||| | ||| | ||||
Sbjct 9591 CGGGGTATCGCT-CCCGCGA---ACGCCAAACGCGTGTATCGAATGATGTACGTTCACGG 9646
Query 9892 CCTGCTGCTTGAGCGGC-GCATCAAGCAGCCCGGCGTACCGCGCCGGCATGAAGGCCGTA 9950
||||||| | || | || || | |||| | ||| ||||| || ||
Sbjct 9647 TTTGCTGCTACAACGCCAGCCCTCTCCACCACGGCCG-CAGCGTCGGCACGAGGGTACGG 9705
Query 9951 TCGCCGTTAACACCAGCGACACGCGCTGGTGCTCGGATGGCTTCGAATTCCGCTGCGACG 10010
|||| || | ||| || |||| || | || || |||||||| || || ||||||
Sbjct 9706 TCGCAGTGGCGAAGAGCAACCAGCGCCGGAGTTCTGACGGCTTCGAGTTTCGTTGCGACA 9765
Query 10011 ACGGTGCGAAAC--TGAGCGTGACCTTTGCCCTGGACTGCTGTGATCGCGAAGCCATCGG 10068
|||| |||| | || |||| || || || || || |||||||| || ||||| | |
Sbjct 9766 ACGG--CGAATCGCTGCGCGTCACGTTCGCTCTAGATTGCTGTGACCGGGAAGCGTTGAG 9823
Query 10069 CTGGGTGGCCAGCCCGAC---CGGCTACAGCGGCGATGACATACGCGACTTGATGCTGGA 10125
||||| ||| | |||| |||| |||||||||| | ||||||| | ||| |||
Sbjct 9824 CTGGGCGGCAA---CGACTGGCGGCCACAGCGGCGACGTGGTACGCGATGTCATGTTGGC 9880
Query 10126 AAGCGTGGAGAAGCGTTTTGGCGACCTACTGCCGACCACACCGG---TGCAATGGCTAAG 10182
| ||| ||||| || |||||| || ||| | | ||| | ||||||| |
Sbjct 9881 AGCCGTCGAGAACCGCTTTGGCAACGCCCTGAAGGCGCGGACGGAAATCGAATGGCTGAC 9940
Query 10183 CGATAACGGTTCGGCCTACATCGCTGAACAGACGCGCCTGTTTGC-TC-GACAGATTGGC 10240
|| | ||| |||| ||| | | ||| |||| | | || | || |||| |||||
Sbjct 9941 GGACATCGGCTCGGGCTATACGACGGAAAAGACCAGGGTCTTCACGTCTGACA--TTGGC 9998
Query 10241 CTACAGCCAGTGACCACGCCGGTACGCAGCCCGCAGAGCAACGGCATGGCAGAGAGCTTC 10300
||| ||||| |||||||||| | ||| |||||| | |||||||||||||| ||||||
Sbjct 9999 CTAAAGCCATTGACCACGCCTGCCTGCAACCCGCAACGTAACGGCATGGCAGAAAGCTTC 10058
Query 10301 GTTAAGACAATCAAGCGCGACTACGTGGCGCACATGCCCAAGCCGGA--TCGAGAG-ACA 10357
|| ||||| || ||||| ||||| |||||| |||||||||||| || || ||| ||
Sbjct 10059 GTGAAGACGATGAAGCGTGACTATGTGGCGTTCATGCCCAAGCCAGACGCCGCGAGCGCA 10118
Query 10358 GCCTTGCGCAACCTGACGATTGCCTTCGAGCATTACAACGAGCAGCATCCGCACAGCGCC 10417
|| |||||| || | || || |||||||||||||||||| |||||||||| ||||
Sbjct 10119 GC---GCGCAATCTCGCTATCGCGTTCGAGCATTACAACGAGAAGCATCCGCATAGCGGG 10175
Query 10418 TTGAAATACCGCTCGCCGAGGGAATTCAGGCG---CTTGGC 10455
||||| || ||||| || | || |||||||| ||||||
Sbjct 10176 TTGAAGTATCGCTCTCCACGTGAGTTCAGGCGAACCTTGGC 10216
>seq1311
Length=2115
Score = 105 bits (116), Expect = 2e-18
Identities = 166/234 (71%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 10280 AACGGCATGGCAGAGAGCTTCGTTAAGACAATCAAGCGCGACTACGTGGCGCACATGCCC 10339
|| || ||||| ||||||||||| || | || ||| | || ||||| | || |||
Sbjct 699 AATGGGATGGCCGAGAGCTTCGTCAAATCGATGAAGTGTGATTACGTTTCATGGATACCC 640
Query 10340 AAGCCGGAT-CGAGAGACAGCCTTGCGCAACCTGACGATTGCCTTCGAGCATTACAACGA 10398
||||| || | || ||||| | | ||| || | | ||| ||||| || | ||||||
Sbjct 639 AAGCCCGACGCCCGA-ACAGCGCTACTAAACTTGGCCAATGCGTTCGACCACTTCAACGA 581
Query 10399 GCAGCATCCGCACAGCGCCTTGAAATACCGCTCGCCGAGGGAATTCAGGCGCTTGGCAGC 10458
| ||||||||||||||||||||||||||||||||| | || || ||| | ||||
Sbjct 580 GTCGCATCCGCACAGCGCCTTGAAATACCGCTCGCCACGCGAGTT---TCGCCAGCCAGC 524
Query 10459 A---GCATCAATTTAACGGGGAGTTGGTGTCCGGTTTGGTAGGGGCAAGTCCAC 10509
| | ||| ||| || || | ||||||| ||||||||||||||||
Sbjct 523 AAATTCTCCAACCTAAGGGTGACCGCGAGTCCGGTCATGTAGGGGCAAGTCCAC 470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138361206579666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |