Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq547 260 4e-65 seq1311 105 2e-18 >seq547 Length=11458 Score = 260 bits (288), Expect = 4e-65 Identities = 488/701 (70%), Gaps = 36/701 (5%) Strand=Plus/Plus Query 9776 GAACTGCCCAGCTACGGTTACCGCCGTGTTTGGGGATTGCTGCGCCGCGCGCGCGAAAAG 9835 || || || |||||||| |||||||| |||||||| | ||||||||| ||| || Sbjct 9531 GAGCTACCGAGCTACGGCTACCGCCGCGTTTGGGGCACGTTGCGCCGCGAGCGGGAGCGC 9590 Query 9836 CAG----TCGCTGCCCGCGATCAACGTAAAACGGGTTTACCGAGTCATGCGTGATCACAA 9891 | | ||||| ||||||| ||| ||||| || || ||| | ||| | |||| Sbjct 9591 CGGGGTATCGCT-CCCGCGA---ACGCCAAACGCGTGTATCGAATGATGTACGTTCACGG 9646 Query 9892 CCTGCTGCTTGAGCGGC-GCATCAAGCAGCCCGGCGTACCGCGCCGGCATGAAGGCCGTA 9950 ||||||| | || | || || | |||| | ||| ||||| || || Sbjct 9647 TTTGCTGCTACAACGCCAGCCCTCTCCACCACGGCCG-CAGCGTCGGCACGAGGGTACGG 9705 Query 9951 TCGCCGTTAACACCAGCGACACGCGCTGGTGCTCGGATGGCTTCGAATTCCGCTGCGACG 10010 |||| || | ||| || |||| || | || || |||||||| || || |||||| Sbjct 9706 TCGCAGTGGCGAAGAGCAACCAGCGCCGGAGTTCTGACGGCTTCGAGTTTCGTTGCGACA 9765 Query 10011 ACGGTGCGAAAC--TGAGCGTGACCTTTGCCCTGGACTGCTGTGATCGCGAAGCCATCGG 10068 |||| |||| | || |||| || || || || || |||||||| || ||||| | | Sbjct 9766 ACGG--CGAATCGCTGCGCGTCACGTTCGCTCTAGATTGCTGTGACCGGGAAGCGTTGAG 9823 Query 10069 CTGGGTGGCCAGCCCGAC---CGGCTACAGCGGCGATGACATACGCGACTTGATGCTGGA 10125 ||||| ||| | |||| |||| |||||||||| | ||||||| | ||| ||| Sbjct 9824 CTGGGCGGCAA---CGACTGGCGGCCACAGCGGCGACGTGGTACGCGATGTCATGTTGGC 9880 Query 10126 AAGCGTGGAGAAGCGTTTTGGCGACCTACTGCCGACCACACCGG---TGCAATGGCTAAG 10182 | ||| ||||| || |||||| || ||| | | ||| | ||||||| | Sbjct 9881 AGCCGTCGAGAACCGCTTTGGCAACGCCCTGAAGGCGCGGACGGAAATCGAATGGCTGAC 9940 Query 10183 CGATAACGGTTCGGCCTACATCGCTGAACAGACGCGCCTGTTTGC-TC-GACAGATTGGC 10240 || | ||| |||| ||| | | ||| |||| | | || | || |||| ||||| Sbjct 9941 GGACATCGGCTCGGGCTATACGACGGAAAAGACCAGGGTCTTCACGTCTGACA--TTGGC 9998 Query 10241 CTACAGCCAGTGACCACGCCGGTACGCAGCCCGCAGAGCAACGGCATGGCAGAGAGCTTC 10300 ||| ||||| |||||||||| | ||| |||||| | |||||||||||||| |||||| Sbjct 9999 CTAAAGCCATTGACCACGCCTGCCTGCAACCCGCAACGTAACGGCATGGCAGAAAGCTTC 10058 Query 10301 GTTAAGACAATCAAGCGCGACTACGTGGCGCACATGCCCAAGCCGGA--TCGAGAG-ACA 10357 || ||||| || ||||| ||||| |||||| |||||||||||| || || ||| || Sbjct 10059 GTGAAGACGATGAAGCGTGACTATGTGGCGTTCATGCCCAAGCCAGACGCCGCGAGCGCA 10118 Query 10358 GCCTTGCGCAACCTGACGATTGCCTTCGAGCATTACAACGAGCAGCATCCGCACAGCGCC 10417 || |||||| || | || || |||||||||||||||||| |||||||||| |||| Sbjct 10119 GC---GCGCAATCTCGCTATCGCGTTCGAGCATTACAACGAGAAGCATCCGCATAGCGGG 10175 Query 10418 TTGAAATACCGCTCGCCGAGGGAATTCAGGCG---CTTGGC 10455 ||||| || ||||| || | || |||||||| |||||| Sbjct 10176 TTGAAGTATCGCTCTCCACGTGAGTTCAGGCGAACCTTGGC 10216 >seq1311 Length=2115 Score = 105 bits (116), Expect = 2e-18 Identities = 166/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 10280 AACGGCATGGCAGAGAGCTTCGTTAAGACAATCAAGCGCGACTACGTGGCGCACATGCCC 10339 || || ||||| ||||||||||| || | || ||| | || ||||| | || ||| Sbjct 699 AATGGGATGGCCGAGAGCTTCGTCAAATCGATGAAGTGTGATTACGTTTCATGGATACCC 640 Query 10340 AAGCCGGAT-CGAGAGACAGCCTTGCGCAACCTGACGATTGCCTTCGAGCATTACAACGA 10398 ||||| || | || ||||| | | ||| || | | ||| ||||| || | |||||| Sbjct 639 AAGCCCGACGCCCGA-ACAGCGCTACTAAACTTGGCCAATGCGTTCGACCACTTCAACGA 581 Query 10399 GCAGCATCCGCACAGCGCCTTGAAATACCGCTCGCCGAGGGAATTCAGGCGCTTGGCAGC 10458 | ||||||||||||||||||||||||||||||||| | || || ||| | |||| Sbjct 580 GTCGCATCCGCACAGCGCCTTGAAATACCGCTCGCCACGCGAGTT---TCGCCAGCCAGC 524 Query 10459 A---GCATCAATTTAACGGGGAGTTGGTGTCCGGTTTGGTAGGGGCAAGTCCAC 10509 | | ||| ||| || || | ||||||| |||||||||||||||| Sbjct 523 AAATTCTCCAACCTAAGGGTGACCGCGAGTCCGGTCATGTAGGGGCAAGTCCAC 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138361206579666