Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq4 109 5e-19 seq1 89.7 4e-13 >seq4 Length=56582383 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || || | || || || || |||||| |||| |||| | Sbjct 31259796 ATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 31259737 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| ||| || || || || || ||||| ||||| Sbjct 31259736 GATACTATTGATAATGTGAAAGCAAAGATACAAGATAAGGAGGGTATTCCCCCAGATCAG 31259677 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||||| ||| ||||| || ||||| ||| | ||| |||| ||||| ||| Sbjct 31259676 CAGAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTCTGGCAGATTACAAT 31259617 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || ||||||||||| || ||| | || | ||||| || |||||| Sbjct 31259616 ATTCAGAAAGAATCTACCCTGCATCTTGTTCTTCGTCTCCGTGGTGGC 31259569 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| || || | ||||| || || || || |||| ||| Sbjct 31287303 ATGCAGATTTTTGTGAAGACTCTTACCGGAAAGACAATAACTTTGGAGGTTGAAAGTTCT 31287244 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | | || ||| ||| ||| |||||||| ||| |||| || || Sbjct 31287243 GATACAATTGACAACGTGAAAGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGACCAG 31287184 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| |||| |||||||| || ||||||||| ||| |||| ||||||||| Sbjct 31287183 CAGAGGCTAATTTTCGCGGGCAAGCAGTTGGAAGATGGCCGTACTCTGGCTGATTATAAT 31287124 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||||||||| || ||||| || ||| | || || ||||| Sbjct 31287123 ATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGGCTTCGAGGTGG 31287077 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| ||||| |||||||| || ||| | || ||| Sbjct 31288443 ATGCAAATCTTTGTGAAAACATTGACTGGCAAAACTATCACCCTCGAGGTGGAGAGTTCT 31288384 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | | || ||| || ||| ||||| ||||| |||| |||||| Sbjct 31288383 GATACCATAGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 31288324 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||||||||| | ||| || ||||||||||||||| || | || ||||| || Sbjct 31288323 CAAAGGCTTATATTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAAC 31288264 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || ||||| ||||| || || || | ||| |||| || | ||||||| Sbjct 31288263 ATCCAAAAGGAATCCACCCTTCACCTTGTGCTGCGATTGAGAGGTGGCA 31288215 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || || | ||||| || || |||||| |||| |||| | Sbjct 31287075 ATGCAAATATTTGTGAAGACTCTTACCGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 31287016 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| || || || || || || |||| || || Sbjct 31287015 GATACGATTGATAACGTGAAAGCGAAGATACAGGATAAGGAGGGTATTCCACCAGACCAG 31286956 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||||||||||| ||| ||||| || ||||| ||| | ||| |||| ||||| ||| Sbjct 31286955 CAAAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAAT 31286896 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || ||||||||||| || ||| | || | || || || |||||| Sbjct 31286895 ATTCAGAAAGAATCTACCCTGCATCTTGTTCTTCGCCTCCGTGGTGGC 31286848 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| || || | ||||| ||||| ||||| |||| || Sbjct 31287759 ATGCAAATTTTTGTAAAGACCCTTACCGGAAAAACTATTACTTTGGAGGTTGAGAGTTCA 31287700 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| || ||| || || |||||| | || ||||| Sbjct 31287699 GATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGCATCCCTCCTGATCAG 31287640 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || ||||| | ||| || |||||| | |||||| | || | || ||||||||| Sbjct 31287639 CAGAGACTTATCTTTGCAGGGAAACAACTTGAAGATGGAAGGACCCTTGCTGATTATAAT 31287580 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || || ||||| || ||||| || || ||||| Sbjct 31287579 ATCCAAAAGGAATCCACTCTGCATTTGGTTTTGCGGCTTCGTGGTGG 31287533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 111183 AAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAA 111242 ||||||| || ||||| ||| |||| || || || || || |||| ||| || || Sbjct 31259941 AAAAATTCAGGATAAAGAGGGCATTCCTCCTGACCAGCAGAGACTAATTTTTGCTGGAAA 31259882 Query 111243 ACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111302 || ||||| ||| | ||| |||||||||||||||| || || |||||||| | || Sbjct 31259881 GCAGTTGGAGGATGGTCGTACTTTGGCCGATTATAATATCCAGAAGGAATCTACTTTGCA 31259822 Query 111303 TTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||| || ||| | || || ||||||| Sbjct 31259821 TTTGGTTTTGAGGCTTCGTGGTGGCA 31259796 >seq1 Length=52991155 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| || ||||| |||||||||||||| || ||| | || ||| | | Sbjct 28610364 ATGCAGATTTTCGTGAAAACCTTGACCGGCAAAACAATAACCCTAGAGGTAGAATCATCC 28610423 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | | || ||| ||||| ||||||||||| |||| || ||| Sbjct 28610424 GACACAATCGACAACGTCAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCTGACCAA 28610483 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | || || | || || ||||| | ||||| || |||| | || ||||| ||| Sbjct 28610484 CAACGTCTCATCTTCGCCGGAAAACAGCTAGAAGACGGTAGAACTCTTGCGGATTACAAT 28610543 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || ||||| || || || || | || | ||||| || ||||||| Sbjct 28610544 ATCCAGAAAGAGTCCACGCTTCACCTTGTTCTCCGTCTCCGTGGTGGCA 28610592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421799957017912