Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq276 167 2e-36 seq7 167 2e-36 seq8 158 1e-33 >seq276 Length=24472 Score = 167 bits (184), Expect = 2e-36 Identities = 306/444 (69%), Gaps = 11/444 (2%) Strand=Plus/Minus Query 23503 AATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT 23562 || ||||| ||||||||||| || || ||||| || | ||| | || || || ||| Sbjct 23016 AACAAACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAAT 22957 Query 23563 GTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATG-ATCCGGA 23621 ||||| ||||||||||| || || ||||| | ||| || || || ||||| | |||||| Sbjct 22956 GTTAACCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGA 22898 Query 23622 AAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA 23681 |||||||| || || ||| ||||| || || | | | | |||| | | | | Sbjct 22897 GAAGAAAATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCGCTTGA 22838 Query 23682 ATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTT---TACACACTCAATTGTTTC 23738 ||| ||||||||| ||| ||||| |||||| ||| | ||| |||||| || Sbjct 22837 ATC---AATCCATTTCATTGCCCAATCAGCCTT---TTTCGCGATACATGGAATTGTCTC 22784 Query 23739 AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAA 23798 |||||| | || | | | ||||| || ||| |||||||||| ||||| || | Sbjct 22783 AATTGCATGAAATAAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAG 22724 Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 ||||| |||||||| || |||||||| ||||| || || ||||| || | || Sbjct 22723 GGAGTACATCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGC 22664 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 ||| || | ||| || || || | |||||| || | |||||| ||||| || || Sbjct 22663 TTCGGAGATTTGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTC 22604 Query 23919 ACTAGCAGCAAAGAAAGCAAGAAC 23942 || || ||||| |||||||| Sbjct 22603 TGAGGCGGCGAAGAAGGCAAGAAC 22580 >seq7 Length=49172423 Score = 167 bits (184), Expect = 2e-36 Identities = 306/444 (69%), Gaps = 11/444 (2%) Strand=Plus/Plus Query 23503 AATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT 23562 || ||||| ||||||||||| || || ||||| || | ||| | || || || ||| Sbjct 10197072 AACAAACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAAT 10197131 Query 23563 GTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATG-ATCCGGA 23621 ||||| ||||||||||| || || ||||| | ||| || || || ||||| | |||||| Sbjct 10197132 GTTAACCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGA 10197190 Query 23622 AAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA 23681 |||||||| || || ||| ||||| || || | | | | |||| | | | | Sbjct 10197191 GAAGAAAATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCGCTTGA 10197250 Query 23682 ATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTT---TACACACTCAATTGTTTC 23738 ||| ||||||||| ||| ||||| |||||| ||| | ||| |||||| || Sbjct 10197251 ATC---AATCCATTTCATTGCCCAATCAGCCTT---TTTCGCGATACATGGAATTGTCTC 10197304 Query 23739 AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAA 23798 |||||| | || | | | ||||| || ||| |||||||||| ||||| || | Sbjct 10197305 AATTGCATGAAATAAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAG 10197364 Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 ||||| |||||||| || |||||||| ||||| || || ||||| || | || Sbjct 10197365 GGAGTACATCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGC 10197424 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 ||| || | ||| || || || | |||||| || | |||||| ||||| || || Sbjct 10197425 TTCGGAGATTTGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTC 10197484 Query 23919 ACTAGCAGCAAAGAAAGCAAGAAC 23942 || || ||||| |||||||| Sbjct 10197485 TGAGGCGGCGAAGAAGGCAAGAAC 10197508 >seq8 Length=45569985 Score = 158 bits (174), Expect = 1e-33 Identities = 509/785 (65%), Gaps = 15/785 (2%) Strand=Plus/Plus Query 23161 TAAAAATCTTCATCTAAAGTGAATTTCACTGCTTT--ATCACTATTCATAACACCCATTT 23218 |||||||| ||||| ||||| || || | | | ||| |||||||||| || Sbjct 25025222 TAAAAATCCTCATCCAAAGTAAAG--CAATAATCAGCACCACCATTCATAACAGAAGCTT 25025279 Query 23219 TTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTT 23278 | ||||| |||||||| || | || || ||||| || || |||| | || || | Sbjct 25025280 TCTGATACTCCCCAACGCGCTTCTCAAAGAAATTGGTTTTCCCCTGAAGCGAAATCAAAT 25025339 Query 23279 CCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAATTCCTTTAAAA 23338 |||| ||||||||||||| | |||||| || | ||| | || || | Sbjct 25025340 CCATCCAATCAAATGGATTCTGAACATTATAAACTTTCTCACAACCAAGCTCACCCAATA 25025399 Query 23339 GCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTT 23398 |||||| || ||||| |||||||| |||| |||||| ||| ||| || || | | Sbjct 25025400 ACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATCCCAACCAACG 25025459 Query 23399 TTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTT 23458 |||| ||| || ||| || ||||||| ||| ||||| || || | Sbjct 25025460 CGCAAGGAAGCGCGTCGCATACAAACTCCCTTTCAATCTCAACCGCATCACGAACAATCT 25025519 Query 23459 GAACAATAACTTCTTCACTAGGTGGATATTTTA---AATACTTAA-ACAATAAACATGCA 23514 || | ||| ||| || | | | |||| | | || ||||| ||| Sbjct 25025520 TCACCACGCGCTCTGTACTCAGTT----TCTGACGCAATAGCGAGTATAACAAACAAGCA 25025575 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 |||||||| |||| |||||| || | ||| | || || || || |||||||| ||| Sbjct 25025576 AAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTTAATCCCGGC 25025635 Query 23575 ATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCC 23634 ||||| || |||||||| | ||| || || ||| || |||||| |||||||| || Sbjct 25025636 ATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAGAAAATTCCT 25025695 Query 23635 TCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAt 23694 |||||| || || || || | | | |||| | | | |||| |||||| Sbjct 25025696 TCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGAATCGCTTGAATC---GATCCAT 25025752 Query 23695 ttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGA 23754 || | ||||| ||| ||| | |||| |||||| |||||||| | || | Sbjct 25025753 TTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATTGCGTGAAATAAT 25025812 Query 23755 AAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAA 23814 | | ||||| || ||| ||||||| || || | || | | |||||| || || Sbjct 25025813 CGATTCTTTTCAGCAGAATCGCTTATATACGTTTCGAGGAGAAGAGAATACATCTCTGAG 25025872 Query 23815 TGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACA 23874 || || ||||||||||| || |||||||| || ||| | |||||||| | |||||| Sbjct 25025873 TGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCACGCGCTTCAGAGATTTGAACT 25025932 Query 23875 TCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAA 23934 || || | |||||| || | ||||||| || ||||| || || || ||||| Sbjct 25025933 TCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATACCGTCGGAGGCGGCGAAGAAG 25025992 Query 23935 GCAAG 23939 || || Sbjct 25025993 GCGAG 25025997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521473743821800