Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq87019 167 3e-36 seq111052 104 3e-17 seq42153 100 3e-16 seq136600 96.9 4e-15 >seq87019 Length=1933 Score = 167 bits (184), Expect = 3e-36 Identities = 388/576 (67%), Gaps = 8/576 (1%) Strand=Plus/Plus Query 53756 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 53815 || ||||| ||||| |||||| | ||||||| ||||| | ||||| |||||||||||| Sbjct 1331 ATGATCTCTGTGCATAGATTAGAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTT 1390 Query 53816 TTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATA 53875 ||||||| | |||||| || || ||| | || | || ||||||||||||| ||| | | Sbjct 1391 CTGTTACAGGAATCCTTGTAGAGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAA 1450 Query 53876 ATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT 53935 || || ||| | | | ||||| | | | | || | || ||| | || Sbjct 1451 ATAGCAAACCACA-GCTTCTGTGCTTTAACA-ACACTCCTAGATTTTCCCTCAGACTCAT 1508 Query 53936 AG--TGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCA 53992 || ||| ||||| ||||||| || |||| |||| | ||| ||||| ||| Sbjct 1509 AGCCTGTGTACAACTTCTCAAACTTTTCACCCC-AACAGTCAGCAAGGCCAGGGGCCTCA 1567 Query 53993 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 54052 | || || | || ||||| || || | || | ||| || ||||| || | ||| || Sbjct 1568 TTAGGGCAAAACAGGGACCAATCCCCATTCTCTTGCACACGCTTCATGAACAAATCTGGG 1627 Query 54053 ATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 54111 |||||||| || || || | ||||| | ||| | || || ||||| |||||| | Sbjct 1628 ATCCAAAG-GCCGTAGAACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCTTCCT 1686 Query 54112 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCC 54171 | || || | | | ||||| | |||||| || ||||| || || | | | | || Sbjct 1687 CAAGTCTAGCCAATCAAATATATCTGCATGCCATGGCTCCAAATAAATAGCAAAAGCACC 1746 Query 54172 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 54231 | |||| ||| |||||||||| ||||| ||| |||| ||| | || |||| ||| Sbjct 1747 CTTTCTTTTGCCTCCACCCTGATCTACGTATCGAGCTGTGTCATTGAACACCCTCAGCAT 1806 Query 54232 TGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT 54291 |||| || |||||||||| |||||| || || || ||||| || | || || || Sbjct 1807 CGGAACTATGCCATTGGATGTACCATTAGTTCCCCTAATGTAGCTGCCCATTGCTCGTAT 1866 Query 54292 ATTACTAATTGATAGACCTATCCCCCCTGCCATTTT 54327 ||| ||| || | || || || || || |||| Sbjct 1867 ATTGTGAATAGACAATCCAATACCACCCGCAGTTTT 1902 >seq111052 Length=1394 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| |||||||| | |||||||| || || || |||||| ||| || | ||||| Sbjct 1231 AGTTCCAGCATTAAAAAGTGTAGGAGAGGCATGGGTGAACCATCTTTGGGACAATAGATG 1172 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || |||| | |||| || || || | ||| || || || || || | ||| || Sbjct 1171 ATATGTTTCGAGAACTGAATCAATGTCATCCTTATGGATGCCAACAGCAACTCTCATCAA 1112 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||||||||| || ||||||| | |||| | || || | || ||| || |||| | Sbjct 1111 CATGTGCTGTGGCCTTTCAATAACCTTGCCTTGTACCTTTAACAGGTAAGACCTTTCAAG 1052 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 |||||||| ||||| || | || |||||||| Sbjct 1051 CGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTC 1017 >seq42153 Length=9390 Score = 100 bits (110), Expect = 3e-16 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||||||||| | || || ||||| || ||||| || |||| Sbjct 4842 ACAGCAAGCAAGCGAAATCGCAGTGCAAGCCTTCATCTCTCGAGATCAATTCATTCGAAA 4901 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 |||| || || ||||| || || ||||| || |||||||| |||| |||| | | | || Sbjct 4902 ACGTCAGCCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAAATGG-CGCAGAAGCTCCCG 4960 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 || ||||| || ||||| || ||| ||||||| Sbjct 4961 GAGAAGAAGATCCCTTCAACGCACGCGAAGGCAA 4994 >seq136600 Length=929 Score = 96.9 bits (106), Expect = 4e-15 Identities = 242/368 (66%), Gaps = 0/368 (0%) Strand=Plus/Minus Query 54284 GCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCAT 54343 || || ||||| ||| || | || || || || || |||| ||| ||| ||| Sbjct 920 GCTCGTATATTGTGAATAGACAATCCAATACCACCCGCAGTTTTGCTTATTTCTGCACAT 861 Query 54344 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 54403 |||| || || ||||| ||||| || ||||| || |||| || || || || Sbjct 860 TCCTTTAGAGTGTCGTAGATACCCTCAATGCTATCCTCTTTCATACACAGGAGGAAGCAA 801 Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 || || || | | || ||||| ||||| || | ||||| || || || || ||| Sbjct 800 CTGCTCAACTGAGGTCTACACGTTCCAGCATTGAAAAGAGTAGGCGAGGCATGAGTGAAC 741 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATT 54523 || || || | | || || || ||| || | ||| |||| || |||||| Sbjct 740 CAGCCTTGGGACATTGTATGATAGGTACGGATGGCAGCGTCAATATTGTCTTTATGAATA 681 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 54583 || || | || | |||||||||||||||||| ||||| || | ||| || || || Sbjct 680 CCAACAGAAACCCTCATTAACATGTGCTGAGGCCTTTCCACTACCTTCCCATTGATCCTC 621 Query 54584 AGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 54643 || | || || |||||| || || || ||||| || | || |||||||||| || Sbjct 620 AGTAGATAAGACCTTTCCAGGGTCTTGAATCCAAAGTAATCATAGTAAAAGTCTCGGTCA 561 Query 54644 TAAATAAT 54651 ||||| || Sbjct 560 TAAATGAT 553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592305009948480