Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11]
190,876 sequences; 353,287,234 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq156471 91.5 1e-13
seq119584 89.7 4e-13
seq48530 89.7 4e-13
seq1864 86.0 5e-12
seq55212 82.4 7e-11
seq37023 82.4 7e-11
>seq156471
Length=3476
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || || | || || |||||||| || ||||| || || || | |
Sbjct 1900 ATGCAGATTTTTGTGAAGACCTTGACGGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 1959
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || || | | || | ||| |||||| || || |||||| | || |||||
Sbjct 1960 GACACAGTCGACAATGTGAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCGGATCAG 2019
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|||||| | || ||||| ||||||||||| || ||| || ||| |||| ||||||||
Sbjct 2020 CAAAGATTGATTTTTGCAGGCAAACAACTCGAGGATGGCAGAACACTGGCGGATTACAAC 2079
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189
|| || || ||||| || ||||| | ||| | ||||| |||| |||
Sbjct 2080 ATACAAAAAGAATCGACCCTTCATCTTGTGCTGCGATTGAGAGGTGGG 2127
Score = 82.4 bits (90), Expect = 7e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 29035 ATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 29094
|| ||||| ||| ||| || |||||||| | || ||||| || || | ||||
Sbjct 2201 ATGTTAAGGCAAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAGCAGCGATTGATCT 2260
Query 29095 TTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAAT 29154
| || || || || || |||||| || |||| | ||||||||||||||||||||||| |
Sbjct 2261 TCGCTGGTAAGCAGCTCGAAGATGGCAGAACTCTTGCCGATTACAATATTCAGAAGGAGT 2320
Query 29155 CTACTCTTCA 29164
| || |||||
Sbjct 2321 CGACCCTTCA 2330
>seq119584
Length=3068
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||||||||| | || || || || || || || ||||| || |||||| |||||
Sbjct 2250 GATAAAGAAGGAATCCCTCCTGACCAGCAGAGGCTGATATTTGCTGGTAAACAATTGGAA 2309
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
||| || |||| |||| ||||||||||| || || ||||| ||||||||| | || ||
Sbjct 2310 GATGGCAGAACTTTGGCGGATTACAATATCCAAAAAGAATCAACTCTTCACCTTGTTTT 2368
>seq48530
Length=6115
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| || |||||| | || ||||| |||||| | |||||||| ||||| || || |||
Sbjct 3419 GACAAGGAAGGTATCCCTCCGGATCAGCAAAGATTGATCTTTGCAGGCAAGCAGCTTGAA 3360
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
||| || |||| | ||||| ||||||||||||||||| || || || || | ||| |
Sbjct 3359 GATGGCAGAACTCTTGCCGACTACAATATTCAGAAGGAGTCGACCCTCCATCTTGTGCTT 3300
Query 29175 CGATTACGAGGAGG 29188
|| | || |||||
Sbjct 3299 CGCCTGCGTGGAGG 3286
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || ||| | ||||| | || || || || |||||| ||| || || | |
Sbjct 3965 AATGCAGATCTTCGTGAAAACTCTTACCGGAAAGACGATTACCTTGGAAGCGAAAGCT-C 3907
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
||| || | | | || ||||| |||||| ||||| ||||| | || ||| ||
Sbjct 3906 AGACACTATTGACAATGTTAAGGCAAAAATCCAGGATAAGGAAGGCATTCCACCAGACCA 3847
Query 29081 ACAAAGACTTATCTTT-GCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACA 29139
|||||| | || ||| || || || ||||| |||||| | || | || |||||||
Sbjct 3846 GCAAAGATTGATTTTTTGCAGGGAAGCAACTCGAAGATGGCCGTACCCTCGCTGATTACA 3787
Query 29140 ATATTCAGAAGGAATCTACTCTTCA 29164
|||| |||||||| || ||||| ||
Sbjct 3786 ATATCCAGAAGGAGTCCACTCTCCA 3762
Score = 82.4 bits (90), Expect = 7e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 29035 ATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 29094
|| ||||| |||||| || || ||||| | || ||||| || ||| | ||||
Sbjct 3667 ATGTTAAGGCAAAAATCCAAGACAAGGAAGGAATCCCTCCGGATCAGCAGAGATTGATCT 3608
Query 29095 TTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAAT 29154
|||| ||||| || || |||||| || |||| | || || ||||||||||||||||| |
Sbjct 3607 TTGCAGGCAAGCAGCTTGAAGATGGCAGAACTCTTGCTGACTACAATATTCAGAAGGAGT 3548
Query 29155 CTACTCTTCA 29164
| || |||||
Sbjct 3547 CGACCCTTCA 3538
>seq1864
Length=9564
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| || |||||| | || ||||| |||||| | |||||||| |||||||| || ||
Sbjct 3511 GACAAGGAAGGTATCCCTCCGGATCAGCAAAGATTGATCTTTGCAGGCAAACAGCTTGAG 3452
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
||| || ||| |||| || ||||||||||| ||||| || || || || | ||| |
Sbjct 3451 GATGGCAGAACACTGGCGGACTACAATATTCAAAAGGAGTCGACCCTCCATCTCGTGCTG 3392
Query 29175 CGATTACGAGGAGGG 29189
||||| |||| |||
Sbjct 3391 CGATTGAGAGGTGGG 3377
Score = 82.4 bits (90), Expect = 7e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| || |||||| | || ||||| || ||| | |||||||| ||||| || || |||
Sbjct 3739 GACAAGGAAGGTATCCCTCCGGATCAGCAGAGATTGATCTTTGCAGGCAAGCAGCTTGAA 3680
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
||| || || |||| ||||||||||| || || |||||||| ||||| | ||| |
Sbjct 3679 GATGGCAGGACACTGGCTGATTACAATATCCAAAAAGAATCTACCCTTCATCTCGTGCTG 3620
Query 29175 CGATTACGAGGAGGG 29189
|| || |||| |||
Sbjct 3619 CGCTTGAGAGGTGGG 3605
>seq55212
Length=5247
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||| | || || | || || || |||||||| |||| ||| ||
Sbjct 3238 ATGCAGATTTTCGTGAAGACTCTTACTGGAAAGACCATTACACTCGAAGTTGAAAGTTCA 3297
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | | || | ||| ||| ||| ||||| ||||| | || || |||
Sbjct 3298 GACACGATTGACAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATTCCTCCGGACCAA 3357
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| | | |||||||| || || || || |||||| | || | || |||||||||
Sbjct 3358 CAGCGCTTGATCTTTGCTGGGAAGCAGCTAGAAGATGGGAGGACGCTAGCTGATTACAAT 3417
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189
||||||||||| || |||||||| |||| || | || |||| |||
Sbjct 3418 ATTCAGAAGGAGTCGACTCTTCATCTGGTTTTGAGGTTGAGAGGTGGG 3465
>seq37023
Length=9928
Score = 82.4 bits (90), Expect = 7e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135
|| || || || || || ||||| || |||||| |||||||| || |||| |||| |||
Sbjct 227 GACCAGCAGAGGCTGATATTTGCTGGTAAACAATTGGAAGATGGCAGAACTTTGGCGGAT 286
Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|||||||| || || ||||| ||||||||| | || ||
Sbjct 287 TACAATATCCAAAAAGAATCAACTCTTCACCTTGTTTT 324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427339561427780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |