Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq156471 91.5 1e-13 seq119584 89.7 4e-13 seq48530 89.7 4e-13 seq1864 86.0 5e-12 seq55212 82.4 7e-11 seq37023 82.4 7e-11 >seq156471 Length=3476 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || |||||||| || ||||| || || || | | Sbjct 1900 ATGCAGATTTTTGTGAAGACCTTGACGGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 1959 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || || | | || | ||| |||||| || || |||||| | || ||||| Sbjct 1960 GACACAGTCGACAATGTGAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCGGATCAG 2019 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || ||||| ||||||||||| || ||| || ||| |||| |||||||| Sbjct 2020 CAAAGATTGATTTTTGCAGGCAAACAACTCGAGGATGGCAGAACACTGGCGGATTACAAC 2079 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || || || ||||| || ||||| | ||| | ||||| |||| ||| Sbjct 2080 ATACAAAAAGAATCGACCCTTCATCTTGTGCTGCGATTGAGAGGTGGG 2127 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 29035 ATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 29094 || ||||| ||| ||| || |||||||| | || ||||| || || | |||| Sbjct 2201 ATGTTAAGGCAAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAGCAGCGATTGATCT 2260 Query 29095 TTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAAT 29154 | || || || || || |||||| || |||| | ||||||||||||||||||||||| | Sbjct 2261 TCGCTGGTAAGCAGCTCGAAGATGGCAGAACTCTTGCCGATTACAATATTCAGAAGGAGT 2320 Query 29155 CTACTCTTCA 29164 | || ||||| Sbjct 2321 CGACCCTTCA 2330 >seq119584 Length=3068 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || || || || || || || ||||| || |||||| ||||| Sbjct 2250 GATAAAGAAGGAATCCCTCCTGACCAGCAGAGGCTGATATTTGCTGGTAAACAATTGGAA 2309 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| || |||| |||| ||||||||||| || || ||||| ||||||||| | || || Sbjct 2310 GATGGCAGAACTTTGGCGGATTACAATATCCAAAAAGAATCAACTCTTCACCTTGTTTT 2368 >seq48530 Length=6115 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || ||||| |||||| | |||||||| ||||| || || ||| Sbjct 3419 GACAAGGAAGGTATCCCTCCGGATCAGCAAAGATTGATCTTTGCAGGCAAGCAGCTTGAA 3360 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || |||| | ||||| ||||||||||||||||| || || || || | ||| | Sbjct 3359 GATGGCAGAACTCTTGCCGACTACAATATTCAGAAGGAGTCGACCCTCCATCTTGTGCTT 3300 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 3299 CGCCTGCGTGGAGG 3286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | ||||| | || || || || |||||| ||| || || | | Sbjct 3965 AATGCAGATCTTCGTGAAAACTCTTACCGGAAAGACGATTACCTTGGAAGCGAAAGCT-C 3907 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | || ||||| |||||| ||||| ||||| | || ||| || Sbjct 3906 AGACACTATTGACAATGTTAAGGCAAAAATCCAGGATAAGGAAGGCATTCCACCAGACCA 3847 Query 29081 ACAAAGACTTATCTTT-GCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACA 29139 |||||| | || ||| || || || ||||| |||||| | || | || ||||||| Sbjct 3846 GCAAAGATTGATTTTTTGCAGGGAAGCAACTCGAAGATGGCCGTACCCTCGCTGATTACA 3787 Query 29140 ATATTCAGAAGGAATCTACTCTTCA 29164 |||| |||||||| || ||||| || Sbjct 3786 ATATCCAGAAGGAGTCCACTCTCCA 3762 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 29035 ATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 29094 || ||||| |||||| || || ||||| | || ||||| || ||| | |||| Sbjct 3667 ATGTTAAGGCAAAAATCCAAGACAAGGAAGGAATCCCTCCGGATCAGCAGAGATTGATCT 3608 Query 29095 TTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAAT 29154 |||| ||||| || || |||||| || |||| | || || ||||||||||||||||| | Sbjct 3607 TTGCAGGCAAGCAGCTTGAAGATGGCAGAACTCTTGCTGACTACAATATTCAGAAGGAGT 3548 Query 29155 CTACTCTTCA 29164 | || ||||| Sbjct 3547 CGACCCTTCA 3538 >seq1864 Length=9564 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || ||||| |||||| | |||||||| |||||||| || || Sbjct 3511 GACAAGGAAGGTATCCCTCCGGATCAGCAAAGATTGATCTTTGCAGGCAAACAGCTTGAG 3452 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || ||| |||| || ||||||||||| ||||| || || || || | ||| | Sbjct 3451 GATGGCAGAACACTGGCGGACTACAATATTCAAAAGGAGTCGACCCTCCATCTCGTGCTG 3392 Query 29175 CGATTACGAGGAGGG 29189 ||||| |||| ||| Sbjct 3391 CGATTGAGAGGTGGG 3377 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || ||||| || ||| | |||||||| ||||| || || ||| Sbjct 3739 GACAAGGAAGGTATCCCTCCGGATCAGCAGAGATTGATCTTTGCAGGCAAGCAGCTTGAA 3680 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || || |||| ||||||||||| || || |||||||| ||||| | ||| | Sbjct 3679 GATGGCAGGACACTGGCTGATTACAATATCCAAAAAGAATCTACCCTTCATCTCGTGCTG 3620 Query 29175 CGATTACGAGGAGGG 29189 || || |||| ||| Sbjct 3619 CGCTTGAGAGGTGGG 3605 >seq55212 Length=5247 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || || || |||||||| |||| ||| || Sbjct 3238 ATGCAGATTTTCGTGAAGACTCTTACTGGAAAGACCATTACACTCGAAGTTGAAAGTTCA 3297 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| ||| ||| ||||| ||||| | || || ||| Sbjct 3298 GACACGATTGACAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATTCCTCCGGACCAA 3357 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | | |||||||| || || || || |||||| | || | || ||||||||| Sbjct 3358 CAGCGCTTGATCTTTGCTGGGAAGCAGCTAGAAGATGGGAGGACGCTAGCTGATTACAAT 3417 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||||||||| || |||||||| |||| || | || |||| ||| Sbjct 3418 ATTCAGAAGGAGTCGACTCTTCATCTGGTTTTGAGGTTGAGAGGTGGG 3465 >seq37023 Length=9928 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || || || || || ||||| || |||||| |||||||| || |||| |||| ||| Sbjct 227 GACCAGCAGAGGCTGATATTTGCTGGTAAACAATTGGAAGATGGCAGAACTTTGGCGGAT 286 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| || || ||||| ||||||||| | || || Sbjct 287 TACAATATCCAAAAAGAATCAACTCTTCACCTTGTTTT 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427339561427780