Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq119584 98.7 8e-16 seq37023 91.5 1e-13 seq1864 86.0 5e-12 >seq119584 Length=3068 Score = 98.7 bits (108), Expect = 8e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || || || || || || || ||||| || |||||||||||| Sbjct 2250 GATAAAGAAGGAATCCCTCCTGACCAGCAGAGGCTGATATTTGCTGGTAAACAATTGGAA 2309 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| || |||| |||| ||||||||||| ||||| ||||| ||||||||| | || || Sbjct 2310 GATGGCAGAACTTTGGCGGATTACAATATCCAAAAAGAATCAACTCTTCACCTTGTTTT 2368 >seq37023 Length=9928 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || || || || || || ||||| || ||||||||||||||| || |||| |||| ||| Sbjct 227 GACCAGCAGAGGCTGATATTTGCTGGTAAACAATTGGAAGATGGCAGAACTTTGGCGGAT 286 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||| ||||| ||||| ||||||||| | || || Sbjct 287 TACAATATCCAAAAAGAATCAACTCTTCACCTTGTTTT 324 >seq1864 Length=9564 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | || ||||| |||||| | |||||||| |||||||| | || Sbjct 3511 GACAAGGAAGGTATCCCTCCGGATCAGCAAAGATTGATCTTTGCAGGCAAACAGCTTGAG 3452 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| || ||| |||| || ||||||||||||||||| || || || || | ||| | Sbjct 3451 GATGGCAGAACACTGGCGGACTACAATATTCAAAAGGAGTCGACCCTCCATCTCGTGCTG 3392 Query 25248 CGATTACGAGGAGGG 25262 ||||| |||| ||| Sbjct 3391 CGATTGAGAGGTGGG 3377 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | || ||||| || ||| | |||||||| ||||| || | ||| Sbjct 3739 GACAAGGAAGGTATCCCTCCGGATCAGCAGAGATTGATCTTTGCAGGCAAGCAGCTTGAA 3680 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| || || |||| ||||||||||| ||||| |||||||| ||||| | ||| | Sbjct 3679 GATGGCAGGACACTGGCTGATTACAATATCCAAAAAGAATCTACCCTTCATCTCGTGCTG 3620 Query 25248 CGATTACGAGGAGGG 25262 || || |||| ||| Sbjct 3619 CGCTTGAGAGGTGGG 3605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409841162890664