Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq156471 107 3e-18 seq119584 105 1e-17 seq48530 89.7 8e-13 seq21302 89.7 8e-13 seq1864 89.7 8e-13 seq55212 86.0 9e-12 >seq156471 Length=3476 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | || | ||| | || |||||||| ||| || ||||| | Sbjct 2126 CCACCTCTCAATCGCAGCACAAGATGAAGGGTCGATTCTTTTTGTATGTTGTAATCCGCC 2067 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| || | |||||| || ||||||||||||||||||||||||||||| Sbjct 2066 AGTGTTCTGCCATCCTCGAGTTGTTTGCCTGCAAAAATCAATCTTTGCTGATCCGGAGGG 2007 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 2006 ATACCTTCCTTGTCTTG 1990 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/183 (69%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||||| ||| ||||| | ||| || | ||| ||||||||||||||||||||| Sbjct 1853 ATATTGTAATCTGCAAGTGTTCTACCATCTTCGAGTTGCTTTCCAGCAAAAATCAATCTT 1794 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 ||||| || ||||| || ||||| || || || || Sbjct 1793 TGCTGGTCTGGAGGGATCCCTTCCTTGTCCTGTATCTTGGCCTTCACGTTGTCTATGGTG 1734 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 ||||| ||||| ||||| | ||||| || || || |||| || |||| ||| || ||| Sbjct 1733 TCTGAGCTTTCGACTTCCAAGGTGATCGTCTTTCCAGTTAGGGTCTTAACGAAAATCTGC 1674 Query 146276 ATT 146278 ||| Sbjct 1673 ATT 1671 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||| | ||||||||||| ||| || | || || ||||| || ||||||| Sbjct 2309 ATATTGTAATCGGCAAGAGTTCTGCCATCTTCGAGCTGCTTACCAGCGAAGATCAATCGC 2250 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||| |||||||| ||||| Sbjct 2249 TGCTGATCCGGAGGAATCCCTTCTTTGTCTTG 2218 >seq119584 Length=3068 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146047 CGTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATC 146106 |||||| || || || || || || | || | ||| |||||||| ||||| ||||| Sbjct 2387 CGTTCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTTTGGATATTGTAATC 2328 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 | | |||||||| ||| || |||||||| |||||||| |||| || ||||| || || Sbjct 2327 CGCCAAAGTTCTGCCATCTTCCAATTGTTTACCAGCAAATATCAGCCTCTGCTGGTCAGG 2268 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 ||| |||||||||||||| || Sbjct 2267 AGGGATTCCTTCTTTATCCTG 2247 >seq48530 Length=6115 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || || | ||||||||||| ||| || | || || || ||||| ||||||||| Sbjct 3331 ATATTGTAGTCGGCAAGAGTTCTGCCATCTTCAAGCTGCTTGCCTGCAAAGATCAATCTT 3390 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||||| || ||||| || ||||| Sbjct 3391 TGCTGATCCGGAGGGATACCTTCCTTGTCTTG 3422 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || || | ||||||||||| ||| || | || || || ||||| |||||||| Sbjct 3559 ATATTGTAGTCAGCAAGAGTTCTGCCATCTTCAAGCTGCTTGCCTGCAAAGATCAATCTC 3618 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||||| |||||||| || ||||| Sbjct 3619 TGCTGATCCGGAGGGATTCCTTCCTTGTCTTG 3650 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/141 (76%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTA-AAGTAGA-TTCTTTAGATATATTATAATC 146106 ||||||| | ||||| | || | ||||| |||| || ||||| | ||||| ||||| Sbjct 3964 TTCCACCACGAAGTCA-AGGACAAGATGTAGAAGTGGAATTCTTCTGG-ATATTGTAATC 4021 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || || || | | ||| || | ||||||||||||||| || | || |||||||| || Sbjct 4022 TGCCAGGGTACGACCATCTTCGAGTTGTTTTCCAGCAAAGATTAGCCTCTGCTGATCTGG 4081 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||||||||| || ||||| Sbjct 4082 AGGAATTCCTTCCTTGTCTTG 4102 >seq21302 Length=5313 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| |||| | || | ||| | || ||||| || ||| || ||||| | Sbjct 4222 CCACCTCTCAGTCGCAGCACAAGATGAAGGGTCGATTCCTTTTGTATGTTGTAATCCGCC 4163 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| || | ||||| || ||||| ||||| || |||||||||||||| Sbjct 4162 AGCGTTCTGCCATCTTCAAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGATCCGGAGGG 4103 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 4102 ATCCCTTCCTTGTCTTG 4086 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || ||||| || | ||||||||||| ||| || | || || || || || ||||||| Sbjct 4405 ATGTTATAGTCGGCAAGAGTTCTGCCATCTTCGAGCTGCTTACCGGCGAAGATCAATCGC 4346 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||| |||||||| ||||| Sbjct 4345 TGCTGATCCGGAGGAATCCCTTCTTTGTCTTG 4314 >seq1864 Length=9564 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | || | || | ||| | || || || ||| || ||||| || || | Sbjct 3378 CCACCTCTCAATCGCAGCACGAGATGGAGGGTCGACTCCTTTTGA-ATATTGTAGTCCGC 3436 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||||||| ||| || | ||||| || ||||| ||||||||||||||||||||||| Sbjct 3437 CAGTGTTCTGCCATCCTCAAGCTGTTTGCCTGCAAAGATCAATCTTTGCTGATCCGGAGG 3496 Query 146170 AATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 3497 GATACCTTCCTTGTCTTG 3514 Score = 89.7 bits (98), Expect = 8e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 || |||||||| ||||| ||||||| ||| ||||| | ||| || | ||| || ||| Sbjct 5221 GTGGATTCTTTCTGGATATTGTAATCTGCAAGTGTTCTACCATCTTCGAGTTGCTTCCCA 5280 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| |||||||| |||||||||||| | || ||||| || || || Sbjct 5281 GCAAATATCAATCTCTGCTGATCCGGAAGGATCCCTTCCTTGTCCTG 5327 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || ||||| || | ||||||||||| ||| || | || || ||||| || ||||||| Sbjct 3195 ATGTTATAGTCGGCAAGAGTTCTGCCATCTTCGAGCTGCTTACCAGCGAAGATCAATCGC 3254 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||| |||||||| ||||| Sbjct 3255 TGCTGATCTGGAGGAATCCCTTCTTTGTCTTG 3286 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 ||||||||||| ||||| ||||| | || || |||| ||| || | || || || Sbjct 3636 GTAGATTCTTTTTGGATATTGTAATCAGCCAGTGTCCTGCCATCTTCAAGCTGCTTGCCT 3695 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| |||||||| |||||||||||||| || ||||| || ||||| Sbjct 3696 GCAAAGATCAATCTCTGCTGATCCGGAGGGATACCTTCCTTGTCTTG 3742 >seq55212 Length=5247 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || || |||| ||| | ||| || || || ||||| ||||| | Sbjct 3464 CCACCTCTCAACCTCAAAACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAATCAGCT 3405 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| |||| || || |||||||| ||||| | || || ||||||||| Sbjct 3404 AGCGTCCTCCCATCTTCTAGCTGCTTCCCAGCAAAGATCAAGCGCTGTTGGTCCGGAGGA 3345 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 3344 ATTCCTTCCTTATCCTG 3328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741752383185920