Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq156471 100 2e-16 seq169900 95.1 9e-15 seq51605 93.3 3e-14 seq63669 87.8 1e-12 seq119584 86.0 5e-12 seq37023 84.2 2e-11 seq105015 82.4 6e-11 >seq156471 Length=3476 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || ||||||||||| |||||||| || |||| |||| | | ||| || | |||| Sbjct 2102 TGAAGGGTCGATTCTTTTTGTATGTTGTAATCCGCCAGTGTTCTGCCATCCTCGAGTTGT 2043 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| | || | |||||| |||||| || | |||||||| || |||| | Sbjct 2042 TTGCCTGCAAAAATCAATCTTTGCTGATCCGGAGGGATACCTTCCTTGTCTTGGATTTTT 1983 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | || ||||| | ||| || | |||||| | || || ||| Sbjct 1982 GCCTTCACATTGTCGACTGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTCCCCGTC 1923 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 || || || |||||||| ||||| Sbjct 1922 AAGGTCTTCACAAAAATCTGCAT 1900 >seq169900 Length=516 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| ||||| |||||||||||||||||||| || | || | |||| Sbjct 220 AGCACCAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAGTCAGCAAGAGTGCGGCCATCT 279 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || || |||| || | |||||| || ||| | |||||| || || Sbjct 280 TCAAGCTGCTTTCCGGCGAAGATCAGACGTTGTTGGTCAGGGGGGATGCCTTCTTTGTCT 339 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| ||| || | ||| ||| || | ||| ||| | ||||||| || Sbjct 340 TGAATTTTGGCCTTCACGTTATCAATAGTATCGGAGCTTTCGACTTCGAGGGTGATGGTT 399 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| | ||||| || || |||||||| Sbjct 400 TTTCCGGTTAGGGTTTTAACGAAGATTTGCAT 431 >seq51605 Length=8292 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| ||||| | || | |||||||||||||||||| || |||||||| || ||| Sbjct 6558 CCTCCCCTAAGTCTCAAAACAAGGTGAAGTGTTGATTCTTTCTGGATGTTGTAATCTGCC 6617 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || ||| ||||||||| ||||| || ||| | || || || || || || || Sbjct 6618 AAGGTCCTACCATCTTCCAACTGTTTACCGGCAAATATTAGCCTCTGCTGGTCAGGAGGA 6677 Query 18219 ACGCCTTCCTTATC 18232 | |||||| ||||| Sbjct 6678 ATGCCTTCTTTATC 6691 >seq63669 Length=360 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| ||||| |||||||||||||||||||| || | || | ||| Sbjct 315 AGCACCAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAGTCAGCAAGAGTACGGCCGTCT 256 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || ||| |||| || | ||| ||||| ||| | ||||||||||| Sbjct 255 TCAAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCTGGGGGGATTCCTTCCTTATCT 196 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCGGTTTCAATGGTGATGC 18291 ||||| | ||| || | ||| ||| | ||| | || ||| | ||||||| Sbjct 195 TGAATTTTTGCCTTTACATTGTCAATAGTAT--CCGAACTTTCAACTTCGAGGGTGATGG 138 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || | ||||| || || || ||||| Sbjct 137 TTTTTCCAGTTAGGGTTTTCACGAAGATCTGCAT 104 >seq119584 Length=3068 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | || | |||||| |||||||||||||| || ||||| || || Sbjct 2384 TCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTTTGGATATTGTAATCCGC 2325 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | | ||||||||||||||| || ||| | || || || || || || || Sbjct 2324 CAAAGTTCTGCCATCTTCCAATTGTTTACCAGCAAATATCAGCCTCTGCTGGTCAGGAGG 2265 Query 18218 CACGCCTTCCTTATC 18232 | ||||| ||||| Sbjct 2264 GATTCCTTCTTTATC 2250 >seq37023 Length=9928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | || | |||||| |||||||||||||| || ||||| || || Sbjct 340 TCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTTTGGATATTGTAATCCGC 281 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 || ||| | | ||||||||||||||| || ||| | || || || || || || Sbjct 280 CAAAGTTCTGCCATCTTCCAATTGTTTACCAGCAAATATCAGCCTCTGCTGGTC 227 >seq105015 Length=404 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| |||| ||| || || || || || |||||||||||||| | Sbjct 253 TCCGCCACGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGA 194 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || |||||||| || ||||||||| ||||||| | || || || || Sbjct 193 AAGCGTGCGACCGTCTTCCAACTGCTTGCCCGCAAAGATAAGACGCTGCTGGTCAGGAGG 134 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || |||||||| || | |||||| | | | ||||| | || ||| Sbjct 133 GATACCCTCCTTATCCTGGATCTTGGACTTGACGTTATCGATCGTGTCGCTGGACTCAAC 74 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | |||||||| | || || || ||||||||||| Sbjct 73 CTCCAATGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378461531578620