Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq87019 149 8e-31 seq42153 109 7e-19 seq111052 104 3e-17 seq6256 87.8 2e-12 seq136600 82.4 1e-10 >seq87019 Length=1933 Score = 149 bits (164), Expect = 8e-31 Identities = 384/576 (67%), Gaps = 8/576 (1%) Strand=Plus/Plus Query 62994 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63053 || ||||| ||||| |||||| | ||||||||||||| | ||||| |||||||||||| Sbjct 1331 ATGATCTCTGTGCATAGATTAGAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTT 1390 Query 63054 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63113 ||||||| | |||||| || || ||| | ||| | || ||||||||||| | ||| | | Sbjct 1391 CTGTTACAGGAATCCTTGTAGAGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAA 1450 Query 63114 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTAT 63173 || || ||| | | || ||||| | | | | || | | ||| | || Sbjct 1451 ATAGCAAACCACA-GCTTCTGTGCTTTAACA-ACACTCCTAGATTTTCCCTCAGACTCAT 1508 Query 63174 AG--AGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCTAGGACATTCA 63230 || || ||||| || |||| || |||| |||| | ||| | ||| ||| Sbjct 1509 AGCCTGTGTACAACTTCTCAAACTTTTCACCCC-AACAGTCAGCAAGGCCAGGGGCCTCA 1567 Query 63231 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 63290 | || || | || ||||| || || | || | ||| || ||||| || | ||| || Sbjct 1568 TTAGGGCAAAACAGGGACCAATCCCCATTCTCTTGCACACGCTTCATGAACAAATCTGGG 1627 Query 63291 ATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63349 |||||||| || || || | ||||| | ||| | || || ||||| |||||| | Sbjct 1628 ATCCAAAG-GCCGTAGAACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCTTCCT 1686 Query 63350 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63409 | || || | | | ||||| | |||||| || ||||| || || || | | | || Sbjct 1687 CAAGTCTAGCCAATCAAATATATCTGCATGCCATGGCTCCAAATAAATAGCAAAAGCACC 1746 Query 63410 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63469 | |||| ||| |||||||||| ||||| ||| |||| ||| | || |||| ||| Sbjct 1747 CTTTCTTTTGCCTCCACCCTGATCTACGTATCGAGCTGTGTCATTGAACACCCTCAGCAT 1806 Query 63470 TGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT 63529 |||| || || || ||| ||||||| || || || |||| || | || || || Sbjct 1807 CGGAACTATGCCATTGGATGTACCATTAGTTCCCCTAATGTAGCTGCCCATTGCTCGTAT 1866 Query 63530 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 63565 ||| ||| || | || || || || || |||| Sbjct 1867 ATTGTGAATAGACAATCCAATACCACCCGCAGTTTT 1902 >seq42153 Length=9390 Score = 109 bits (120), Expect = 7e-19 Identities = 240/351 (68%), Gaps = 9/351 (3%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||||||||||| || || ||||| || ||||| || |||| Sbjct 4842 ACAGCAAGCAAGCGAAATCGCAGTGCAAGCCTTCATCTCTCGAGATCAATTCATTCGAAA 4901 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 |||| || || ||||| || || ||||| || |||||||| |||| ||| |||| Sbjct 4902 ACGTCAGCCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAAATGGCGCAGAAGCTCCCGG 4961 Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33750 | |||||||| ||||| || ||| || ||||||| | ||||| | ||| | || Sbjct 4962 AGAAGAAGATCCCTTCAAC-GCACGCGAAGGCAACCAACCTCTC-CGCGAACGTCTCCGA 5019 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 | | | ||||| | | ||||| |||||| | | || ||||| || || || | Sbjct 5020 T-CCGTCGATCCAGCTCAGCGCCCAGCTCGCCTTCCTCTCGACGCAAGGGATGGTGTCGA 5078 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTAT--CTTTAACATAAGTATCGATCAAAAG 33868 | || ||||| | | || || | | || ||| | || || |||| | || Sbjct 5079 TCGCGCGGAAGAGGCGGCTCTTCTC-CTCCGATCACTTGGATGTAGGTCTCGAGGAGGAG 5137 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919 || ||||| || || || ||||| || ||||| ||||| || |||||||| Sbjct 5138 GCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAA 5188 >seq111052 Length=1394 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||||||| | |||||||| || || || |||||| ||| || | ||||| Sbjct 1231 AGTTCCAGCATTAAAAAGTGTAGGAGAGGCATGGGTGAACCATCTTTGGGACAATAGATG 1172 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || || | | |||| || || || | ||| || || || || || | ||| || Sbjct 1171 ATATGTTTCGAGAACTGAATCAATGTCATCCTTATGGATGCCAACAGCAACTCTCATCAA 1112 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||||||||| || ||||||| || ||| | || || |||| ||| || |||| | Sbjct 1111 CATGTGCTGTGGCCTTTCAATAACCTTGCCTTGTACCTTTAACAGGTAAGACCTTTCAAG 1052 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 |||||||| ||||| || | || |||||||| Sbjct 1051 CGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTC 1017 >seq6256 Length=4455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| || |||||||| |||||||||||| ||| | ||| ||||| ||||| | Sbjct 1146 CAAGCGAAGTCACAGTGCAGGCCCTCGTCTCTAGAAATCAGTTCATTAGAGAACGTTAAG 1205 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 33679 |||||||| | || | ||||||||||||||| || || Sbjct 1206 CCGGGCATCAATCCCCTCTTTTTAAGCCAAAAAATCGA 1243 >seq136600 Length=929 Score = 82.4 bits (90), Expect = 1e-10 Identities = 239/368 (65%), Gaps = 0/368 (0%) Strand=Plus/Minus Query 63522 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581 || || ||||| ||| || | || || || || || |||| ||| ||| ||| Sbjct 920 GCTCGTATATTGTGAATAGACAATCCAATACCACCCGCAGTTTTGCTTATTTCTGCACAT 861 Query 63582 CGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641 |||| ||||| ||||| || || |||||||| || |||| || || || || Sbjct 860 TCCTTTAGAGTGTCGTAGATACCCTCAATGCTATCCTCTTTCATACACAGGAGGAAGCAA 801 Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || || || | | | ||||| ||||| || | ||||| || || || || ||| Sbjct 800 CTGCTCAACTGAGGTCTACACGTTCCAGCATTGAAAAGAGTAGGCGAGGCATGAGTGAAC 741 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 || || || | | || || || || || | ||| |||| || |||||| Sbjct 740 CAGCCTTGGGACATTGTATGATAGGTACGGATGGCAGCGTCAATATTGTCTTTATGAATA 681 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTC 63821 || || | || | |||||||||||||||||| ||||| || | || || || || Sbjct 680 CCAACAGAAACCCTCATTAACATGTGCTGAGGCCTTTCCACTACCTTCCCATTGATCCTC 621 Query 63822 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63881 | | || || |||||| || || || ||||| || | || |||||||||| || Sbjct 620 AGTAGATAAGACCTTTCCAGGGTCTTGAATCCAAAGTAATCATAGTAAAAGTCTCGGTCA 561 Query 63882 TAAATAAT 63889 ||||| || Sbjct 560 TAAATGAT 553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628314886697280