Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq87019 120 3e-22 seq33760 98.7 9e-16 >seq87019 Length=1933 Score = 120 bits (132), Expect = 3e-22 Identities = 240/349 (69%), Gaps = 9/349 (3%) Strand=Plus/Plus Query 36931 TGACTTTGATCTATAAACGCA-CCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGA 36989 || |||||||| || || ||| |||||||| |||||||| |||| || | ||| Sbjct 455 TGGCTTTGATCAATGAA-GCAGCCTCTGTCTGCTGCCATATCTACTATGTTTCGTTGCTT 513 Query 36990 TATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTA---AATCTAAATGTTG 37046 |||||||| || || | || || ||| | ||| || | |||||| ||||| Sbjct 514 AATCTCCCACACTGTCCTGTAGATGGCTTTGAGTCCATCCGGAATGGAATCTATCTGTTG 573 Query 37047 AATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACT 37106 |||||| |||||||| | | ||||| ||| |||| |||| | |||||| | | Sbjct 574 AATAGAGCCATTATGGTAAATAATTGCATTTTTTAGGTCAGGAGTCCACAGACCCATCTC 633 Query 37107 TATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCT 37166 | | || || |||| ||||| || || || ||| || ||| || ||||| | Sbjct 634 TGTGAGGTCATTCAAAAGGTGCTTGTTCACCACAATAAATTCACCACTTAGAACTCTGCG 693 Query 37167 --TGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGAT 37224 ||||||||| ||| | ||||||||||||| | ||||||| || | | || ||| Sbjct 694 GCTGTATATAT-TTGAT-GTATATGGTTCAAAGCACTCATTGTTTCCGAGGATCTGACTA 751 Query 37225 GTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCAT 37273 || |||||||| ||||| || ||||| | ||| |||||||| |||| Sbjct 752 GTGGATGCAGTTGGCATGGGGGCTATCAAAAGAGAATTTCTCACCCCAT 800 Score = 120 bits (132), Expect = 3e-22 Identities = 406/618 (66%), Gaps = 11/618 (2%) Strand=Plus/Plus Query 37705 AGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTA 37764 ||||| || ||||| ||| ||| | | |||| || |||||||| || |||||| Sbjct 1292 AGATTGCAGACAGCTGTTTCCTCTGGACTTGTGAATTCGATGATCTCTGTGCATAGATTA 1351 Query 37765 CTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATAT 37824 || | || ||||| | || ||||| ||| | ||||| ||||| || || Sbjct 1352 GAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTTCTGTTACAGGAATCCTTGTAG 1411 Query 37825 AGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT- 37883 || || || || | ||| ||| || || || || | ||||| ||| | ||||| Sbjct 1412 AGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAAATAGCAAACCACAG-CTTCTG 1470 Query 37884 TGCTTTAACGATCGCTT-TAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAA 37942 ||||||||| | | || || |||| || | || || || | || || || | || Sbjct 1471 TGCTTTAACAA-CACTCCTAGATTTTCCCTCAGACTCATAGCCTGTGTACAACTTCTCAA 1529 Query 37943 AATCATTCCCCCATACA-TC-GCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 | | | ||||| ||| || ||| | || || || || || | || ||||| Sbjct 1530 ACTTTTCACCCCA-ACAGTCAGCA-AGGCCAGGGGCCTCATTAGGGCAAAACAGGGACCA 1587 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATA 38059 || ||| | || || || | ||| || ||||| || | ||| || || ||| || | Sbjct 1588 ATCCCCATTCTCTTGCACACGCTTCATGAACAAATCTGGGATCCA-AAGGCCGTAGAACA 1646 Query 38060 AATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATA 38119 ||||| | ||| | ||||| || || |||||| || ||| ||| |||| |||| Sbjct 1647 AATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCTTCCTCAAGTCTAGCCAATCAAATA 1706 Query 38120 TATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCT 38179 |||| || |||||||| || | |||||| | | || || |||||| | || |||| Sbjct 1707 TATCTGCATGCCATGGCTCCAAATAAATAGCAAAAGCACCCTTTCTTTTGCCTCCACCCT 1766 Query 38180 GATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATT 38239 ||| | |||| | |||||| ||| | | || | ||| || ||||| ||||| ||| Sbjct 1767 GATCTACGTATCGAGCTGTGTCATTGAACACCCTCAGCATCGGAACTATGCCATTGGATG 1826 Query 38240 TGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTA 38299 | || || | || || || | ||| | ||||||||||| || |||||||| | Sbjct 1827 TACCATTAGTTCCCCTAATGTAGCTGCCCATTGCTCGTATATTGTGAATAGACAATCCAA 1886 Query 38300 TTCCACCTGCATGTTTTG 38317 | ||||| ||| |||||| Sbjct 1887 TACCACCCGCA-GTTTTG 1903 >seq33760 Length=8815 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 38171 CACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATAC 38230 |||| ||||||| | ||||| | |||||| ||| | | || | ||| || || || | Sbjct 3358 CACCACCCTGATCCACATATCGAGCTGTGTCATTGAAAACTCGAAGCATTGGGACAATGC 3299 Query 38231 CATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCG 38290 |||| ||| | || || | || ||||||| | || | || |||||||| |||| Sbjct 3298 CATTGGATGTCCCATTCGTTCCACGTATATAACTTCCTGTGGCACGTATATTGTGGATCG 3239 Query 38291 ACAATCCTATTCCACCTGCATGTTTTGATATTAA-AGCGCATTGTTTTAACGTATCAAAT 38349 ||| || || || || || || |||| || ||| ||| |||| || | |||||| || Sbjct 3238 ACACACCAATACCTCCAGC-TGATTTGCTAATAACAGCACATTCCTTAAGTGTATCATAT 3180 Query 38350 ATACCTTCTATACTGTCATCCTTTAT 38375 || ||||| |||||||||||||| || Sbjct 3179 ATGCCTTCAATACTGTCATCCTTCAT 3154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467406923253440