Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq87019 181 1e-40 seq111052 104 3e-17 seq42153 100 4e-16 seq33760 98.7 1e-15 seq136600 91.5 2e-13 >seq87019 Length=1933 Score = 181 bits (200), Expect = 1e-40 Identities = 391/576 (68%), Gaps = 8/576 (1%) Strand=Plus/Plus Query 65787 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 65846 || ||||| ||||| |||||| | ||||||| ||||| | ||||| |||||||||||| Sbjct 1331 ATGATCTCTGTGCATAGATTAGAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTT 1390 Query 65847 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 65906 ||||||| | |||||| || || ||| | ||| | || ||||||||||| | ||| | | Sbjct 1391 CTGTTACAGGAATCCTTGTAGAGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAA 1450 Query 65907 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT 65966 || || ||| | | || ||||| | | | | || | || ||| | || Sbjct 1451 ATAGCAAACCACA-GCTTCTGTGCTTTAACA-ACACTCCTAGATTTTCCCTCAGACTCAT 1508 Query 65967 AG--TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCA 66023 || ||| ||||| || |||| || |||||| || | ||| ||||| ||| Sbjct 1509 AGCCTGTGTACAACTTCTCAAACTTTTCACCCCAA-CAGTCAGCAAGGCCAGGGGCCTCA 1567 Query 66024 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 66083 | || || | || ||||| || || | || | ||| || ||||| || | ||| || Sbjct 1568 TTAGGGCAAAACAGGGACCAATCCCCATTCTCTTGCACACGCTTCATGAACAAATCTGGG 1627 Query 66084 ATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142 |||||||| || || || ||||||| | ||| | || || ||||| |||||| | Sbjct 1628 ATCCAAAG-GCCGTAGAACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCTTCCT 1686 Query 66143 AAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCC 66202 | || || | | | ||||| |||||| || ||||| || || || | | | || Sbjct 1687 CAAGTCTAGCCAATCAAATATATCTGCATGCCATGGCTCCAAATAAATAGCAAAAGCACC 1746 Query 66203 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 66262 | |||| ||| |||||||||| ||||| ||| |||| ||| | || |||| ||| Sbjct 1747 CTTTCTTTTGCCTCCACCCTGATCTACGTATCGAGCTGTGTCATTGAACACCCTCAGCAT 1806 Query 66263 TGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT 66322 |||| || ||||||||||||||||| || || || ||||| || |||| || || Sbjct 1807 CGGAACTATGCCATTGGATGTACCATTAGTTCCCCTAATGTAGCTGCCCATTGCTCGTAT 1866 Query 66323 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 66358 ||| ||| || | || || || || || |||| Sbjct 1867 ATTGTGAATAGACAATCCAATACCACCCGCAGTTTT 1902 >seq111052 Length=1394 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| |||||||| | |||||||| || || || |||||| ||| || | ||||| Sbjct 1231 AGTTCCAGCATTAAAAAGTGTAGGAGAGGCATGGGTGAACCATCTTTGGGACAATAGATG 1172 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || || | | |||| || || || | ||| || || || || || | ||| || Sbjct 1171 ATATGTTTCGAGAACTGAATCAATGTCATCCTTATGGATGCCAACAGCAACTCTCATCAA 1112 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||||||||| || ||||||| | |||| | || || |||| ||| || |||| | Sbjct 1111 CATGTGCTGTGGCCTTTCAATAACCTTGCCTTGTACCTTTAACAGGTAAGACCTTTCAAG 1052 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 66669 |||||||| ||||| || | || |||||||| Sbjct 1051 CGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTC 1017 >seq42153 Length=9390 Score = 100 bits (110), Expect = 4e-16 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || |||||||||||||| | || || ||||| || ||||| || |||| Sbjct 4842 ACAGCAAGCAAGCGAAATCGCAGTGCAAGCCTTCATCTCTCGAGATCAATTCATTCGAAA 4901 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 |||| || || ||||| || || ||||| || |||||||| |||| |||| | | | || Sbjct 4902 ACGTCAGCCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAAATGG-CGCAGAAGCTCCCG 4960 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 36302 || ||||| || ||||| || ||| ||||||| Sbjct 4961 GAGAAGAAGATCCCTTCAACGCACGCGAAGGCAA 4994 >seq33760 Length=8815 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || |||||||| | |||| ||| |||| ||| |||||| | |||||| | ||| ||| Sbjct 3356 CCACCCTGATCCACATATCGAGCTGTGTCATTGAAAACTCGAAGCATTGGGACAATGCCA 3297 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 |||||||| ||||| || || ||||| ||||| | ||||| ||||| || || Sbjct 3296 TTGGATGTCCCATTCGTTCCACGTATATAACTTCCTGTGGCACGTATATTGTGGATCGAC 3237 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| || || || || ||| || | || ||| || | |||||||| ||| Sbjct 3236 ACACCAATACCTCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGTGTATCATATATG 3177 Query 66396 CCCTCTATACTATCATCCATCATG 66419 || || ||||| |||||| ||||| Sbjct 3176 CCTTCAATACTGTCATCCTTCATG 3153 >seq136600 Length=929 Score = 91.5 bits (100), Expect = 2e-13 Identities = 242/370 (65%), Gaps = 0/370 (0%) Strand=Plus/Minus Query 66313 TTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 66372 |||| || ||||| ||| || | || || || || || |||| ||| ||| | Sbjct 922 TTGCTCGTATATTGTGAATAGACAATCCAATACCACCCGCAGTTTTGCTTATTTCTGCAC 863 Query 66373 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 66432 || |||| || || ||||| ||||| || ||||| || |||| || || || | Sbjct 862 ATTCCTTTAGAGTGTCGTAGATACCCTCAATGCTATCCTCTTTCATACACAGGAGGAAGC 803 Query 66433 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 66492 | || || || | | || ||||| ||||| || | ||||| || || || || | Sbjct 802 AACTGCTCAACTGAGGTCTACACGTTCCAGCATTGAAAAGAGTAGGCGAGGCATGAGTGA 743 Query 66493 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 66552 |||| || || | | || || || || || | ||| |||| || ||||| Sbjct 742 ACCAGCCTTGGGACATTGTATGATAGGTACGGATGGCAGCGTCAATATTGTCTTTATGAA 683 Query 66553 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 66612 | || || | || | |||||||||||||||||| ||||| || | ||| || || Sbjct 682 TACCAACAGAAACCCTCATTAACATGTGCTGAGGCCTTTCCACTACCTTCCCATTGATCC 623 Query 66613 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 66672 ||| | || || |||||| || || || ||||| || | || |||||||||| | Sbjct 622 TCAGTAGATAAGACCTTTCCAGGGTCTTGAATCCAAAGTAATCATAGTAAAAGTCTCGGT 563 Query 66673 CGTAAATAAT 66682 | ||||| || Sbjct 562 CATAAATGAT 553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656602432607840