Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq38015 102 8e-17 seq21302 102 8e-17 seq169900 100 3e-16 seq105015 100 3e-16 seq156471 91.5 1e-13 seq109020 91.5 1e-13 seq1864 91.5 1e-13 seq63669 87.8 2e-12 seq38014 87.8 2e-12 seq53616 82.4 8e-11 >seq38015 Length=2403 Score = 102 bits (112), Expect = 8e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 || ||| || || | || ||||| || |||||||| || || || ||| || || Sbjct 2187 CAGAACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAGTCCGCCAATGTCCTTCCATC 2246 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| || ||| | ||||| | |||||||||||||| || |||||||| || Sbjct 2247 TTCCAGCTGTTTGCCTGCAAAAATCAGCCTCTGCTGATCGGGAGGGATTCCTTCTTTATC 2306 Query 139672 GGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || | || | | || | |||||||| | ||| || || | || | || Sbjct 2307 -CTGAATCTTCGCCTTCACATTGTCGATTGTGTCGGAGCTCTCGACTTCCAGAGTGATCG 2365 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || || | ||||| ||||| ||||||||| Sbjct 2366 TCTTCCCAGTTAGGGTTTTGACGAAGATTTGCATA 2400 >seq21302 Length=5313 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || ||||||||||| ||| | || || ||||||||||| Sbjct 4426 TGAAGGGTCGACTCCTTCTGAATGTTATAGTCGGCAAGAGTTCTGCCATCTTCGAGCTGC 4367 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| || |||||| || |||||||| ||||| || ||||||||||| ||| | || Sbjct 4366 TTACCGGCGAAGATCAATCGCTGCTGATCCGGAGGAATCCCTTCTTTGTC-TTGAATCTT 4308 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || ||| | | || | ||||| | ||| ||||||| || | || || || || Sbjct 4307 TGCTTTCACATTATCAATGGTGTCTGAACTCTCAACCTCAAGAGTTATGGTTTTTCCAGT 4248 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 ||||| || || || ||||||||| Sbjct 4247 TAACGTCTTCACAAAGATTTGCATA 4223 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 |||||||||||||| |||||| ||||||| | ||||| || ||||| || ||||| ||| Sbjct 3694 TCTTCGAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATCCCTTCCTTG 3635 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||||||| || | | || | ||| || | || || |||| ||| | | Sbjct 3634 TCTTGGATTTTTGCCTTGACATTGTCAATTGTATCCGAACTTTCGACTTCAAGGGTTATC 3575 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | || || ||||| || ||||| Sbjct 3574 GTCTTGCCAGTGAGAGTCTTAACGAAAATCTGCAT 3540 >seq169900 Length=516 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||||||||||||||| || || Sbjct 205 CCACCACGGAGACGGAGCACCAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAGTCAGCA 264 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || || ||||||||||||| || || || || Sbjct 265 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATCAGACGTTGTTGGTCAGGGGGG 324 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| |||| | || | | || | || |||| | || || Sbjct 325 ATGCCTTCTTTGTC-TTGAATTTTGGCCTTCACGTTATCAATAGTATCGGAGCTTTCGAC 383 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || ||||| | ||||| ||||| ||||||||| Sbjct 384 TTCGAGGGTGATGGTTTTTCCGGTTAGGGTTTTAACGAAGATTTGCATA 432 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||||||||| |||||||| || | || | |||||||||||| Sbjct 1 TGAAGAGTTGACTCTTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCTTCGAGCTGT 60 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| |||| || || ||||| || || || || ||||||||||| ||| |||| Sbjct 61 TTACCAGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATCCCTTCTTTGTC-TTGAATTTT 119 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | ||||||| | ||||| |||| || | || || || || Sbjct 120 GGCCTTCACGTTGTCGATAGTGTCGGAGCTTTCCACTTCAAGAGTGATGGTTTTTCCAGT 179 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 | || || |||||||| |||||| Sbjct 180 TAGGGTCTTGACGAATATCTGCATA 204 >seq105015 Length=404 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| || | ||| | || ||||| | ||| ||||| || |||||||| || || Sbjct 255 TGTCCGCCACGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCC 196 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| |||||| | ||| || || ||| |||| ||||| ||||| || ||| Sbjct 195 GAAAGCGTGCGACCGTCTTCCAACTGCTTGCCCGCAAAGATAAGACGCTGCTGGTCAGGA 136 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || || || || || ||| || || | | || | |||||| ||| ||| Sbjct 135 GGGATACCCTCCTTATCCTGGATCTTGGACTTGACGTTATCGATCGTGTCGCTGGACTCA 76 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || | ||||||||||| | ||| || ||||| |||||||| Sbjct 75 ACCTCCAATGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 26 >seq156471 Length=3476 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || ||||| || |||||| | || || ||||||||||| Sbjct 2330 TGAAGGGTCGACTCCTTCTGAATATTGTAATCGGCAAGAGTTCTGCCATCTTCGAGCTGC 2271 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 |||||||| |||||| || |||||||| ||||| || ||||||||||| ||| | || Sbjct 2270 TTACCAGCGAAGATCAATCGCTGCTGATCCGGAGGAATCCCTTCTTTGTC-TTGAATCTT 2212 Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || ||| | | || | ||||| | ||| ||||| | || | || || || || Sbjct 2211 TGCCTTAACATTATCGATGGTGTCTGAACTCTCAACCTCCAGAGTTATGGTTTTTCCAGT 2152 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| || || || || || ||||| Sbjct 2151 CAAGGTCTTCACAAAGATCTGCAT 2128 >seq109020 Length=336 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||| || ||| || |||| || || ||||| || || Sbjct 251 GTGGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGGCCATCCTCAAGCTGCTTGCCG 192 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || ||||||| || |||||||| || || |||||||| ||||| ||| || || Sbjct 191 GCGAAGATCAGGCGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGCTCTTG 132 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || |||| || ||| || || | || | ||||||||||||| || Sbjct 131 ACGTTGTCAATGGTATCGGAGGACTCGACTTCGAGAGTGATGGTCTTGCCGGTCAGAGTC 72 Query 139748 TTTACGAATATTTGCATA 139765 |||||||| || |||||| Sbjct 71 TTTACGAAGATCTGCATA 54 >seq1864 Length=9564 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || ||||||||||| ||| | || || ||||||||||| Sbjct 3174 TGAAGGGTCGACTCCTTCTGAATGTTATAGTCGGCAAGAGTTCTGCCATCTTCGAGCTGC 3233 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 |||||||| |||||| || |||||||| ||||| || ||||||||||| ||| | || Sbjct 3234 TTACCAGCGAAGATCAATCGCTGCTGATCTGGAGGAATCCCTTCTTTGTC-TTGAATCTT 3292 Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || ||| | | || | ||||| | ||| ||||| | || | || || || || Sbjct 3293 TGCCTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAGAGTTATGGTTTTCCCAGT 3352 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || || || || || || ||||| Sbjct 3353 TAATGTCTTGACAAAGATCTGCAT 3376 >seq63669 Length=360 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||||| || ||||||||||||||||| || || Sbjct 331 GCCACCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCTTTTTGAATGTTGTAGTCAGC 272 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||| ||||| || || ||| |||| |||||||||||||| || || Sbjct 271 AAGAGTACGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGATCTGGGGG 212 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| |||||| |||| | || | || || | || | Sbjct 211 GATTCCTTCCTTATC-TTGAATTTTTGCCTTTACATTGTCAATAGTATCCGAACTTTCAA 153 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | ||| | || || || || | ||||| ||||| || |||||| Sbjct 152 CTTCGAGGGTGATGGTTTTTCCAGTTAGGGTTTTCACGAAGATCTGCATA 103 >seq38014 Length=3548 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| || || || || || ||||| ||||| || || Sbjct 1013 GTCGACTCCTTTTGAATGTTGTAGTCCGCCAAAGTCCTTCCATCTTCCAGCTGCTTGCCT 1072 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | ||||| | |||||||||||||| || ||||| || || ||| || || Sbjct 1073 GCAAAAATCAGCCTCTGCTGATCGGGAGGGATTCCTTCCTTATCCTGGATCTTCGCCTTC 1132 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| || || | || | |||||| || || | ||| Sbjct 1133 ACGTTGTCGATCGTGTCGGAGCTCTCGACTTCCAGAGTGATCGTCTTCCCAGTTAGGGTT 1192 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 1193 TTGACGAAGATTTGCATA 1210 >seq53616 Length=2978 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| || || | || ||||| ||||||||||| || || || || || ||||| Sbjct 1734 AACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCCGCCAAAGTCCTTCCATCTTC 1675 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || || || | ||||| | |||||||||||||| || ||||| || || | Sbjct 1674 CAGCTGCTTGCCTGCGAAAATCAGTCTCTGCTGATCGGGAGGGATTCCTTCCTTATC-CT 1616 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | || | ||||||| | ||| || || | || | ||||| Sbjct 1615 GAATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGACTTCCAGAGTGATCGTCT 1556 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || | ||||| ||||| ||||||||| Sbjct 1555 TCCCAGTTAGGGTTTTGACGAAGATTTGCATA 1524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494880416099200