Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq87019 172 8e-38 seq111052 113 6e-20 seq42153 111 2e-19 seq136600 100 4e-16 seq33760 93.3 6e-14 seq6256 87.8 3e-12 >seq87019 Length=1933 Score = 172 bits (190), Expect = 8e-38 Identities = 387/575 (67%), Gaps = 6/575 (1%) Strand=Plus/Plus Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725 || || || ||||| || ||| | |||| || ||||| | ||||| |||||||||||| Sbjct 1331 ATGATCTCTGTGCATAGATTAGAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTT 1390 Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785 ||||||| | |||||| || || ||| | ||| | || ||||||||||| | ||| | | Sbjct 1391 CTGTTACAGGAATCCTTGTAGAGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAA 1450 Query 79786 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTAT 79845 || || ||| | | || ||||| | | ||| || | || ||| | || Sbjct 1451 ATAGCAAACCACA-GCTTCTGTGCTTTAACA-ACACTCCTAGATTTTCCCTCAGACTCAT 1508 Query 79846 TG--TGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGT 79903 | ||| || || || |||| || |||||| || | | ||||| || | Sbjct 1509 AGCCTGTGTACAACTTCTCAAACTTTTCACCCCAACAGTCAGCAAGGCCAGGGGCCTCAT 1568 Query 79904 CAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAA 79963 ||| || | || ||||| || |||| || | || || ||||| || | ||| || | Sbjct 1569 TAGGGCAAAACAGGGACCAATCCCCATTCTCTTGCACACGCTTCATGAACAAATCTGGGA 1628 Query 79964 TCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA 80022 ||||||| || || || | ||||| | ||| | ||| || ||||| |||||| | Sbjct 1629 TCCAAAG-GCCGTAGAACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCTTCCTC 1687 Query 80023 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCC 80082 | || || | | | ||||| | |||||| || ||||| || || || | | | ||| Sbjct 1688 AAGTCTAGCCAATCAAATATATCTGCATGCCATGGCTCCAAATAAATAGCAAAAGCACCC 1747 Query 80083 GGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 80142 || |||| ||| |||||||||| ||||| ||| |||| ||| | || |||| ||| Sbjct 1748 TTTCTTTTGCCTCCACCCTGATCTACGTATCGAGCTGTGTCATTGAACACCCTCAGCATC 1807 Query 80143 GGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 80202 |||| || ||||||||||||||||| || || || ||||| || | || || ||| Sbjct 1808 GGAACTATGCCATTGGATGTACCATTAGTTCCCCTAATGTAGCTGCCCATTGCTCGTATA 1867 Query 80203 TTACTAATTGATAGACCTATTCCCCCTGCCATTTT 80237 || ||| || | || || || || || |||| Sbjct 1868 TTGTGAATAGACAATCCAATACCACCCGCAGTTTT 1902 >seq111052 Length=1394 Score = 113 bits (124), Expect = 6e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| |||||||| | |||||||| || || || |||||| ||| |||| ||||| Sbjct 1231 AGTTCCAGCATTAAAAAGTGTAGGAGAGGCATGGGTGAACCATCTTTGGGACAATAGATG 1172 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || || | | |||| || || || | ||| || || || || || | ||| || Sbjct 1171 ATATGTTTCGAGAACTGAATCAATGTCATCCTTATGGATGCCAACAGCAACTCTCATCAA 1112 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| || ||||||| | |||| | || || |||| |||||| |||| | Sbjct 1111 CATGTGCTGTGGCCTTTCAATAACCTTGCCTTGTACCTTTAACAGGTAAGACCTTTCAAG 1052 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 |||||||| ||||| || | || |||||||| Sbjct 1051 CGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTC 1017 >seq42153 Length=9390 Score = 111 bits (122), Expect = 2e-19 Identities = 423/644 (66%), Gaps = 29/644 (5%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAA--TGATATAT 49726 || ||||||||||| || | || ||||| || || || || || | ||| |||| || Sbjct 4559 TTCTGGTATTCACCAACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAAACTGATCAAT 4618 Query 49727 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 49786 | |||| |||| || ||||| ||||| || | || | ||||||| || | Sbjct 4619 T--CCATCCAATCGAAAGGATTCTGCACATTGTAGAGCTTCCCATATCCCAAAGCATTGA 4676 Query 49787 TCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-- 49844 ||| |||||||| |||||||| || || |||| | || | |||||| || | Sbjct 4677 GCAACCTATCCGCTACAAATTCAATGTACTGACTCATTAAATCCCCATTCATCCCCACCA 4736 Query 49845 AAGTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTT 49902 ||| || || ||||| |||| | ||| | | | | | || || ||||| | Sbjct 4737 AAGCGCAA--GGCAGAGCATCGCAC-ACGAACTCCCTCT-CGATCTCCACAGCATCCGCC 4792 Query 49903 ATAATAGATCTAACGGTTTCTTCACTCGG-TGGATG--CAATAAA-TGTTTAAACATCAA 49958 | || | | || | || |||||| | | || ||| | | ||| ||| ||| Sbjct 4793 ACTATCCCTTTCACTTTCTCCTCACTCAGCTTCATCTTCAACAGACTGT----ACAGCAA 4848 Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 || |||||||||||||||| || || ||||| || | ||| || |||||||| || Sbjct 4849 GCAAGCGAAATCGCAGTGCAAGCCTTCATCTCTCGAGATCAATTCATTCGAAAACGTCAG 4908 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077 || ||||| || || ||||| || |||||||| |||| |||| || ||| || |||| Sbjct 4909 CCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAAATGG-CGCAGAAGCTCCCGGAGAAGA 4967 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TCATG 50135 |||| ||||| || || |||||||| | ||||| | ||| | | | | | | Sbjct 4968 AGATCCCTTCAACGCACGCGAAGGCAACCAACCTCTC-CGCGAAC-GTCTCCGATCCGTC 5025 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| | | ||||| |||||| | | || ||||| || || || || || Sbjct 5026 GATCCAGCTCAGCGCCCAGCTCGCCTTCCTCTCGACGCAAGGGATGGTGTCGATCGCGCG 5085 Query 50196 AAAGAGATAGtttttttCATTACTAT--CTTTAACATAAGTATCGATCAAAAGACTATAC 50253 ||||| | | || || | | || ||| | || || |||| | || || ||| Sbjct 5086 GAAGAGGCGGCTCTTCTC-CTCCGATCACTTGGATGTAGGTCTCGAGGAGGAGGCTGTAC 5144 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 || || || || ||||| || ||||| ||||| || |||||||| Sbjct 5145 ATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAA 5188 >seq136600 Length=929 Score = 100 bits (110), Expect = 4e-16 Identities = 243/368 (66%), Gaps = 0/368 (0%) Strand=Plus/Minus Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253 || || ||||| ||| || | || || || || || |||| ||| ||| ||| Sbjct 920 GCTCGTATATTGTGAATAGACAATCCAATACCACCCGCAGTTTTGCTTATTTCTGCACAT 861 Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313 |||| || || ||||| ||||| |||||||| || |||| || || || || Sbjct 860 TCCTTTAGAGTGTCGTAGATACCCTCAATGCTATCCTCTTTCATACACAGGAGGAAGCAA 801 Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || || || | | || ||||| ||||| || | ||||| || || || || ||| Sbjct 800 CTGCTCAACTGAGGTCTACACGTTCCAGCATTGAAAAGAGTAGGCGAGGCATGAGTGAAC 741 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 || || |||| | || || || || || | || |||| || |||||| Sbjct 740 CAGCCTTGGGACATTGTATGATAGGTACGGATGGCAGCGTCAATATTGTCTTTATGAATA 681 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 || || | || | |||||||||||||||||| ||||| || | ||| ||| || || Sbjct 680 CCAACAGAAACCCTCATTAACATGTGCTGAGGCCTTTCCACTACCTTCCCATTGATCCTC 621 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 | | ||||| |||||| || || || ||||| || | || |||||||||| || Sbjct 620 AGTAGATAAGACCTTTCCAGGGTCTTGAATCCAAAGTAATCATAGTAAAAGTCTCGGTCA 561 Query 80554 TAAATAAT 80561 ||||| || Sbjct 560 TAAATGAT 553 >seq33760 Length=8815 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || |||||||| | |||| ||| |||| ||| |||||| | |||||| | ||| ||| Sbjct 3356 CCACCCTGATCCACATATCGAGCTGTGTCATTGAAAACTCGAAGCATTGGGACAATGCCA 3297 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| || || ||||| ||||| ||||||| ||||| || || Sbjct 3296 TTGGATGTCCCATTCGTTCCACGTATATAACTTCCTGTGGCACGTATATTGTGGATCGAC 3237 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| || || || || ||| || | || ||| || | |||||||| ||| Sbjct 3236 ACACCAATACCTCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGTGTATCATATATG 3177 Query 80275 CCCTCTATGCTATCATCAATCATG 80298 || || || || ||||| ||||| Sbjct 3176 CCTTCAATACTGTCATCCTTCATG 3153 >seq6256 Length=4455 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| || |||||||| |||||||||||| ||| ||||| || || ||||| | Sbjct 1146 CAAGCGAAGTCACAGTGCAGGCCCTCGTCTCTAGAAATCAGTTCATTAGAGAACGTTAAG 1205 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 50057 |||||||| | || | ||||||||||||||| || || Sbjct 1206 CCGGGCATCAATCCCCTCTTTTTAAGCCAAAAAATCGA 1243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716555046556640