Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq26240 102 6e-17 seq1108 93.3 3e-14 seq53616 89.7 4e-13 seq55212 87.8 1e-12 >seq26240 Length=11166 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || | |||||| |||| |||| |||||| || | ||||| |||| Sbjct 9097 CCACCACGGAGCCTGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 9156 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | ||||||||||| || ||||| | ||| || || | || Sbjct 9157 AGGGTGCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGA 9216 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | ||||| || | | |||||| ||| ||| || Sbjct 9217 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCG-GAGCTCTCCAC 9275 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| |||||||||||||| || ||||| Sbjct 9276 CTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 9323 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| || | ||||||||||| || ||||| || | |||||||||| | Sbjct 8522 CCTCCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGGCC 8581 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | || || || ||||| ||||| | ||| ||||| | || Sbjct 8582 AGGGTACGGCCATCCTCAAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGATCCGGAGGA 8641 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | || || || ||| |||||| ||| ||| || Sbjct 8642 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCG-GAGCTCTCCAC 8700 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| || || ||||| ||||| ||||| Sbjct 8701 CTCCAAAGTAATGGTCTTTCCGGTAAGGGTCTTCACGAAAATCTGCAT 8748 >seq1108 Length=4941 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| || | ||||| ||||| || ||||| || | |||||||||| | Sbjct 114 CCTCCTCTCAGCCTCAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGGCC 173 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | || || || ||||| ||||| | ||| ||||| | || Sbjct 174 AAGGTACGACCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGA 233 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || || || || |||| || | ||||| || ||| |||||| ||| ||| | Sbjct 234 ATGCCCTCCTTGTC-CTGAATCTTGGCCTTGACATTGTCAATGGTGTCGG-AGCTCTCCA 291 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||| || ||||| || || || ||||||||||| ||||| Sbjct 292 CCTCCAAAGTTATGGTCTTTCCTGTAAGGGTCTTCACAAAAATCTGCAT 340 >seq53616 Length=2978 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||||||| | | || || |||| || | || || ||||| || Sbjct 1260 CTCCTTCTGAATATTGTAATCTGCAAGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 1201 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036 |||| ||||| || || | || | ||||| || || |||| || | | ||||| Sbjct 1200 GATCAGCCGCTGCTGGTCCGGTGGAATTCCTTCCTTATC-CTGAATCTTCGCCTTGACGT 1142 Query 43037 TGCCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095 || | | |||||| ||| | |||| |||| ||||| |||||||||||||| |||||| Sbjct 1141 TGTCGATCGTGTCGG-AGCTTTCGACCTCTAGGGTTATGGTTTTTCCGGTTAGGGTTTTC 1083 Query 43096 ACAAAAATTTGCATTTT 43112 || || || ||||| || Sbjct 1082 ACGAAGATCTGCATATT 1066 >seq55212 Length=5247 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||| | | || || |||| || | ||| || || ||||| Sbjct 2947 TCCTTCTGGATATTGTAATCAGCTAGGGTTCGACCGTCCTCGAGTTGCTTCCCAGCAAAG 2888 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCT 43037 ||||| ||||| || || | || | ||||| || || |||| || | ||||| | Sbjct 2887 ATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTC-CTGAATCTTGGCCTTGACATT 2829 Query 43038 GCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | | | || || | ||| ||| || || | || || ||||||||||| || ||||||| Sbjct 2828 GTCGATGGTATC-CGAGCTCTCAACTTCAAGGGTGATGGTTTTTCCGGTGAGCGTTTTCA 2770 Query 43097 CAAAAATTTGCATT 43110 |||||||||||||| Sbjct 2769 CAAAAATTTGCATT 2756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380482419422808