Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq87019 170 3e-37 seq42153 114 2e-20 seq140292 91.5 2e-13 seq33760 86.0 8e-12 >seq87019 Length=1933 Score = 170 bits (188), Expect = 3e-37 Identities = 388/578 (67%), Gaps = 12/578 (2%) Strand=Plus/Plus Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 || || || ||||| |||||| | ||||||| ||||| | ||||| |||||||||||| Sbjct 1331 ATGATCTCTGTGCATAGATTAGAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTT 1390 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 ||||||| | |||||| || || || | ||| | || ||||||||||| | ||| | | Sbjct 1391 CTGTTACAGGAATCCTTGTAGAGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAA 1450 Query 71869 ATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCT----TT 71923 || || ||| | | || | || || | | | || | | ||||| || | Sbjct 1451 ATAGCAAACCACAGCTTCT-GTGCTTTAACAACACTCCTAGA----TTTTCCCTCAGACT 1505 Query 71924 CGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATT 71983 | || ||| || || || |||| || |||||| | | | ||||| | Sbjct 1506 CATAGCCTGTGTACAACTTCTCAAACTTTTCACCCCAACAGTCAGCAAGGCCAGGGGCCT 1565 Query 71984 CATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAG 72043 |||| || || | || ||||| || |||| || | || || ||||| || | ||| | Sbjct 1566 CATTAGGGCAAAACAGGGACCAATCCCCATTCTCTTGCACACGCTTCATGAACAAATCTG 1625 Query 72044 GAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 72102 | |||||||| || || || | ||||| | ||| | ||| || ||||| |||||| Sbjct 1626 GGATCCAAAG-GCCGTAGAACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCTTC 1684 Query 72103 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 72162 | | || || | | | ||||| | |||||| || ||||| || || || | | | Sbjct 1685 CTCAAGTCTAGCCAATCAAATATATCTGCATGCCATGGCTCCAAATAAATAGCAAAAGCA 1744 Query 72163 CCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 72222 ||| | |||| ||| |||||||||| ||||| ||| |||| ||| | || |||| | Sbjct 1745 CCCTTTCTTTTGCCTCCACCCTGATCTACGTATCGAGCTGTGTCATTGAACACCCTCAGC 1804 Query 72223 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 72282 || |||| || |||||||||| |||||| || || || ||||| || | || || Sbjct 1805 ATCGGAACTATGCCATTGGATGTACCATTAGTTCCCCTAATGTAGCTGCCCATTGCTCGT 1864 Query 72283 ATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTT 72320 |||||| ||| || | || || || || || |||| Sbjct 1865 ATATTGTGAATAGACAATCCAATACCACCCGCAGTTTT 1902 >seq42153 Length=9390 Score = 114 bits (126), Expect = 2e-20 Identities = 240/351 (68%), Gaps = 9/351 (3%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || |||||||||||||||| || |||||||| || ||||| || |||| Sbjct 4842 ACAGCAAGCAAGCGAAATCGCAGTGCAAGCCTTCATCTCTCGAGATCAATTCATTCGAAA 4901 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 |||| || || ||||| || || ||||| || |||||||| || | |||| | | | || Sbjct 4902 ACGTCAGCCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAAAT-GGCGCAGAAGCTCCCG 4960 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || |||||||| ||||| || ||| ||||||| | |||||| | || | | | Sbjct 4961 GAGAAGAAGATCCCTTCAACGCACGCGAAGGCAACCA--ACCTCTCCGCGAACGTCTCCG 5018 Query 42236 --TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | | ||||| | | ||||| |||||| | | || ||||| || || || | Sbjct 5019 ATCCGTCGATCCAGCTCAGCGCCCAGCTCGCCTTCCTCTCGACGCAAGGGATGGTGTCGA 5078 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTAT--CTTTAACATATGTATCGATCAAAAG 42351 | || ||||| | | || || | | || ||| | || || |||| | || Sbjct 5079 TCGCGCGGAAGAGGCGGCTCTTCTC-CTCCGATCACTTGGATGTAGGTCTCGAGGAGGAG 5137 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || ||||| || || || ||||| || ||||| ||||| || |||||||| Sbjct 5138 GCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAA 5188 >seq140292 Length=591 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 ||||| || |||| ||||| || ||| || || || |||||| || |||||||| Sbjct 122 TCTCTCTCATATTTAGTATACAAAGCTTCAAATTCTTCGCCCCAACAATCAGCTAATCCA 181 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 ||| | ||| | ||||| | ||||||||| ||||||| | | |||| || ||| ||| Sbjct 182 GGAGACTCACTTGGACAGAACAATGACCATTCTCCATTAGATTGAACTCTTTGCATGAAG 241 Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 ||||| || | |||||| || ||| | ||| || | | |||||||| Sbjct 242 AGATCGGGTACCCAAAGTGCATAAAACAAATCCCTTGCACGGTGCTCCTC 291 >seq33760 Length=8815 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 ||||| || |||| ||||| || ||| || || || |||||| || |||||||| Sbjct 3817 TCTCTCTCATATTTAGTATACAAAGCTTCAAATTCTTCACCCCAACAATCAGCTAATCCA 3758 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 || | ||| | ||||| | |||||||| ||||||| | | |||| || ||| ||| Sbjct 3757 GGTGACTCACTAGGACAGAATAATGACCATTCTCCATTAGATTGAACTCTTTGCATGAAG 3698 Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 |||||||| | |||||| || ||| | ||| || | | |||||||| Sbjct 3697 AGATCAGGTACCCAAAGTGCATAAAACAAATCCCTTGCACGGTGCTCCTC 3648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669537895425760