Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq87019 91.5 2e-13 seq42153 89.7 8e-13 >seq87019 Length=1933 Score = 91.5 bits (100), Expect = 2e-13 Identities = 345/539 (64%), Gaps = 2/539 (0%) Strand=Plus/Minus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGG 96879 ||| |||| |||| || ||||| || ||| ||||| | | |||||||| |||| Sbjct 1823 CCAATGGCATAGTTCCGATGCTGAGGGTGTTCAATGACACAGCTCGATACGTAGATCAGG 1764 Query 96880 GCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTT 96939 | || ||| | || ||| | || | || ||||| || ||||| || || | | Sbjct 1763 GTGGAGGCAAAAGAAAGGGTGCTTTTGCTATTTATTTGGAGCCATGGCATGCAGATATAT 1704 Query 96940 TTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGT 96999 |||| | | || || | || || ||| |||||| |||| | || |||| Sbjct 1703 TTGATTGGCTAGACTTGAGGAAGAATCATGGAAAGGAAGAGAACAGAGCTCGAGATTTGT 1644 Query 97000 TTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGA 97059 | || | || ||| | |||||||||||||||||||| || | || ||| | ||| Sbjct 1643 TCTACGGCCTTTGGATCCCAGATTTGTTCATGAAGCGTGTGCAAGAGAATGGGGATTGGT 1584 Query 97060 GCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGG 97119 ||| | ||||| | | | || || || | || || ||||| ||| |||||||| Sbjct 1583 CCCTGTTTTGCCCTAATGAGGCCCCTGGCCTTGCTGACTGTTGGGGTGAAAAGTTTGAGA 1524 Query 97120 CCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAA- 97178 |||||| | ||| ||| ||||| || ||| || | |||| |||| Sbjct 1523 AGTTGTACACAGGCTATGAGTCTGAGGGAAAATCTAGGAGTGTTGTTAAAGCAC-AGAAG 1465 Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| || || || || ||| | || || || | ||| ||||| ||||||||| Sbjct 1464 CTGTGGTTTGCTATTTTGGAAGCCCAGATTGAAACAGGCAATCCCTACATGCTCTACAAG 1405 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || || | || || || || | || | || || |||||| || ||||| Sbjct 1404 GATTCCTGTAACAGAAAGAGTAATCAGCAAAACCTTGGAACTATCAAGTCTTCTAATCTA 1345 Query 97299 TGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATC 97357 ||||| || || | || | | | ||| || || || || || ||| ||| || || Sbjct 1344 TGCACAGAGATCATCGAATTCACAAGTCCAGAGGAAACAGCTGTCTGCAATCTCGCTTC 1286 >seq42153 Length=9390 Score = 89.7 bits (98), Expect = 8e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 ||| ||| || || |||| || ||||| ||| || || |||||||| || || || | Sbjct 5012 CGTTCGCGGAGAGGTTGGTTGCCTTCGCGTGCGTTGAAGGGATCTTCTTCTCCGGGAGCT 4953 Query 125473 T-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 | |||| |||| |||||||| ||||||||||| |||||||| || |||||| || Sbjct 4952 TCTGCG-CCATTTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGGCTGACGTTTTCGAAT 4894 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || || || || |||| || ||| | ||||| || || || Sbjct 4893 GAATTGATCTCGAGAGATGAAGGCTTGCACTGCGATTTCGC 4853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739291069801760