Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq55212 131 1e-25 seq169900 113 3e-20 seq156471 107 1e-18 seq21302 95.1 9e-15 seq1864 93.3 3e-14 seq26240 84.2 2e-11 >seq55212 Length=5247 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| || ||||| | ||| ||||| || || || || || |||||||| | Sbjct 2983 CCACCTCTCAACCTCAAAACCAGATGTAGGGTCGATTCCTTCTGGATATTGTAATCAGCT 2924 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| |||| || | ||| || ||||| | |||||||| || ||||| || Sbjct 2923 AGGGTTCGACCGTCCTCGAGTTGCTTCCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGG 2864 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||| ||| ||| ||| | || |||||||| | || || Sbjct 2863 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTATCCGAGCTCTCAACT 2804 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| || || || ||||| |||||||||||||| Sbjct 2803 TCAAGGGTGATGGTTTTTCCGGTGAGCGTTTTCACAAAAATTTGCAT 2757 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| || ||||| | |||||| || || || || || || |||||||| | Sbjct 3464 CCACCTCTCAACCTCAAAACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAATCAGCT 3405 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | ||| | ||||||| || || ||||| | ||||| || |||||||| ||| Sbjct 3404 AGCGTCCTCCCATCTTCTAGCTGCTTCCCAGCAAAGATCAAGCGCTGTTGGTCCGGAGGA 3345 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || ||| ||||| ||| ||| | || || || || | |||| || Sbjct 3344 ATTCCTTCCTTATCCTGAATCTTTGC-CTTGACATTGTCAATCGTGTCTGAACTTTCAAC 3286 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||||| || || || ||||| || || ||||| ||||| Sbjct 3285 TTCGAGTGTAATGGTCTTTCCAGTAAGAGTCTTCACGAAAATCTGCAT 3238 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || || |||||||| || | | | ||||| | |||| Sbjct 3668 TGAAGGGTGGATTCCTTCTGGATATTGTAATCTGCCAGGGTGCGACCATCTTCGAGTTGT 3609 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | |||||||| || || || |||||| ||||| || || ||| ||| Sbjct 3608 TTCCCAGCAAAGATCAAACGCTGCTGATCCGGTGGAATCCCTTCCTTATCCTGAATCTTT 3549 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | ||||| ||||| | | || || || || || ||||| || ||||| Sbjct 3548 GC-CTTCACATTATCTATTGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTCCCTGT 3490 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || ||||| Sbjct 3489 TAGAGTCTTGACAAAGATCTGCAT 3466 >seq169900 Length=516 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || |||||||| |||||||| || ||| | | | ||||| Sbjct 223 ACCAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAGTCAGCAAGAGTGCGGCCATCTTCA 282 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | |||| |||||||||||| || || ||||||||||| | Sbjct 283 AGCTGCTTTCCGGCGAAGATCAGACGTTGTTGGTCAGGGGGGATGCCTTCTTTGTCTTGA 342 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| || | || || |||||| |||| || || | ||| |||||||| Sbjct 343 ATTTTGGCCTTCACGTTATCAATAGTATCGGAGCTTTCGACTTCGAGGGTGATGGTTTTT 402 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || || ||||||||| Sbjct 403 CCGGTTAGGGTTTTAACGAAGATTTGCATA 432 >seq156471 Length=3476 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | || | ||||||||| || |||||||||||||||||||| Sbjct 2126 CCACCTCTCAATCGCAGCACAAGATGAAGGGTCGATTCTTTTTGTATGTTGTAATCCGCC 2067 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | || || | ||||||||| || | ||||| | ||| || || || Sbjct 2066 AGTGTTCTGCCATCCTCGAGTTGTTTGCCTGCAAAAATCAATCTTTGCTGATCCGGAGGG 2007 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||| ||| ||| | || | || ||| | || || Sbjct 2006 ATACCTTCCTTGTCTTGGATTTTTGCCTTCACATTGTCGACTGTGTCGGAGCTCTCAACC 1947 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || |||| || || |||||||| ||||| Sbjct 1946 TCCAAAGTGATGGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGCAT 1900 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || || || || ||||||||| ||| |||| | ||||| | || Sbjct 2331 ATGAAGGGTCGACTCCTTCTGAATATTGTAATCGGCAAGAGTTCTGCCATCTTCGAGCTG 2272 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| | ||||| || || || || ||||| ||||||||||| ||| || Sbjct 2271 CTTACCAGCGAAGATCAATCGCTGCTGATCCGGAGGAATCCCTTCTTTGTCTTGAATCTT 2212 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| ||| ||| | || ||||| || | | || || || | || |||||||| || | Sbjct 2211 TGC-CTTAACATTATCGATGGTGTCTGAACTCTCAACCTCCAGAGTTATGGTTTTTCCAG 2153 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| || ||||| Sbjct 2152 TCAAGGTCTTCACAAAGATCTGCAT 2128 >seq21302 Length=5313 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| || | || | ||||||||| || || ||||||||||||||||| Sbjct 4222 CCACCTCTCAGTCGCAGCACAAGATGAAGGGTCGATTCCTTTTGTATGTTGTAATCCGCC 4163 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| | |||||||| || | ||||| | || || || || Sbjct 4162 AGCGTTCTGCCATCTTCAAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGATCCGGAGGG 4103 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||| ||| ||| | || | || ||| | || || Sbjct 4102 ATCCCTTCCTTGTCTTGTATTTTCGCCTTAACATTGTCGACTGTGTCGGAGCTCTCAACC 4043 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || |||| || || |||||||| ||||| Sbjct 4042 TCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAAATCTGCAT 3996 Score = 95.1 bits (104), Expect = 9e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || || || ||||| || ||| ||| |||| | ||||| | || Sbjct 4427 ATGAAGGGTCGACTCCTTCTGAATGTTATAGTCGGCAAGAGTTCTGCCATCTTCGAGCTG 4368 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || || ||| | ||||| || || || || ||||| ||||||||||| ||| || Sbjct 4367 CTTACCGGCGAAGATCAATCGCTGCTGATCCGGAGGAATCCCTTCTTTGTCTTGAATCTT 4308 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 |||| || ||| | || ||||| || | | || || || | || |||||||| || | Sbjct 4307 TGCT-TTCACATTATCAATGGTGTCTGAACTCTCAACCTCAAGAGTTATGGTTTTTCCAG 4249 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 | | || || ||||| ||||||||| Sbjct 4248 TTAACGTCTTCACAAAGATTTGCATA 4223 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| ||||| | | || | ||| |||||||| ||||||||||| |||||||| Sbjct 3994 CCACCCCTCAAGCGCAGCACAAGATGGAGGGTGGACTCTTTTTGTATATTGTAATCAGCG 3935 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | ||||| | || || || || | ||||| | || || || || Sbjct 3934 AGCGTCCTGCCATCTTCAAGCTGCTTCCCTGCAAAGATCAATCTCTGCTGATCTGGAGGG 3875 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| ||| ||||| ||| ||| | || || ||||| | || || Sbjct 3874 ATCCCTTCCTTGTCTTGAATCTTTGC-CTTAACATTATCGATTGTATCTGAGCTCTCGAC 3816 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||||| || || |||||||| ||||| Sbjct 3815 CTCCAAAGTGATGGTCTTTCCTGTCAATGTCTTCACAAAAATCTGCAT 3768 >seq1864 Length=9564 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || || || ||||| || ||| ||| |||| | ||||| | || Sbjct 3173 ATGAAGGGTCGACTCCTTCTGAATGTTATAGTCGGCAAGAGTTCTGCCATCTTCGAGCTG 3232 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| | ||||| || || || || ||||| ||||||||||| ||| || Sbjct 3233 CTTACCAGCGAAGATCAATCGCTGCTGATCTGGAGGAATCCCTTCTTTGTCTTGAATCTT 3292 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| ||| ||| | || ||||| || | | || || || | || |||||||| || | Sbjct 3293 TGC-CTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAGAGTTATGGTTTTCCCAG 3351 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | | || || ||||| || ||||| Sbjct 3352 TTAATGTCTTGACAAAGATCTGCAT 3376 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || | ||||||||| || |||||||| || |||||||| Sbjct 3606 CCACCTCTCAAGCGCAGCACGAGATGAAGGGTAGATTCTTTTTGGATATTGTAATCAGCC 3665 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | ||||| | || ||||| || | ||||| | || || || || Sbjct 3666 AGTGTCCTGCCATCTTCAAGCTGCTTGCCTGCAAAGATCAATCTCTGCTGATCCGGAGGG 3725 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| ||| ||||| ||| ||| | || ||||| | | | || || Sbjct 3726 ATACCTTCCTTGTCTTGAATCTTTGC-CTTCACATTATCGATGGTGTTTGAACTCTCAAC 3784 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||||| || || |||||||| ||||| Sbjct 3785 CTCCAAAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAAATCTGCAT 3832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | || | ||| ||||| || || ||||| || ||||| || Sbjct 3378 CCACCTCTCAATCGCAGCACGAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCCGCC 3437 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | || || | |||||||| || | ||||| | ||| || || || Sbjct 3438 AGTGTTCTGCCATCCTCAAGCTGTTTGCCTGCAAAGATCAATCTTTGCTGATCCGGAGGG 3497 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| ||| ||||| ||| ||| | || ||||| || | | || || Sbjct 3498 ATACCTTCCTTGTCTTGAATCTTTGC-CTTCACATTATCGATGGTGTCTGAACTCTCAAC 3556 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || |||| || || ||||| || ||||| Sbjct 3557 CTCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAATATCTGCAT 3604 >seq26240 Length=11166 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || ||||| || || || |||||||| ||| || | | |||| || Sbjct 9115 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCG 9174 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||| ||| | ||||| | || ||||| ||||||||||| ||||| Sbjct 9175 AGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGG 9234 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || ||||| ||| | || || || | ||| ||||| || Sbjct 9235 ATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTT 9294 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| ||||| || ||||| Sbjct 9295 CCGGTGAGAGTTTTCACAAAGATCTGCAT 9323 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || || || ||||||||||| || | || | || || || || Sbjct 8318 TGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCCAGGGTCCTTCCATCCTCCAACTGC 8377 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||| | || || || ||||| || || ||||| || ||| Sbjct 8378 TTTCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCTTGGATCTTG 8437 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| ||| | ||||| || || || ||||| || ||||| Sbjct 8438 GCCTTCACATTGTCAATGGTGTCGGAGCTCTCTACCTCCAAAGTTATGGTCTTTCCTGTG 8497 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 8498 AGGGTCTTGACAAAAATCTGCAT 8520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361336662074316