Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq38015 107 2e-18 seq53616 95.1 1e-14 seq38014 95.1 1e-14 seq1864 89.7 4e-13 seq156471 86.0 5e-12 seq55212 86.0 5e-12 seq21302 86.0 5e-12 >seq38015 Length=2403 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| ||| | |||| ||||| || |||||||| ||||| ||||| |||| Sbjct 2171 TTCCCCCGCGCAGCCTCAGAACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAGTCCG 2230 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| ||| | | || ||||||||||| || ||| |||| || ||||||||||| | Sbjct 2231 CCAATGTCCTTCCATCTTCCAGCTGTTTGCCTGCAAAAATCAGCCTCTGCTGATCGGGAG 2290 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || ||||| || ||| ||| || || | | ||| || ||| ||| Sbjct 2291 GGATTCCTTCTTTATCCTGAATCTTCGCCTTCACATTGTCGATTGTGTCGGAGCTCTCGA 2350 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || || || || |||| |||||||| || |||||||| Sbjct 2351 CTTCCAGAGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 2399 >seq53616 Length=2978 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| ||| | |||| ||||| || |||||||||||||| ||||| |||||| Sbjct 1751 CCGCCGCGCAGCCTGAGAACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCCGCC 1692 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || |||||||| || || || |||| |||||||||||||| || Sbjct 1691 AAAGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAAATCAGTCTCTGCTGATCGGGAGGG 1632 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || ||| ||| || || | | ||| || ||| ||| | Sbjct 1631 ATTCCTTCCTTATCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGACT 1572 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || || |||| |||||||| || |||||||| Sbjct 1571 TCCAGAGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 1525 >seq38014 Length=3548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| ||| | ||||| ||||| || |||||||||||||| ||||| |||||| Sbjct 983 CCGCCGCGCAGCCTCAGCACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCCGCC 1042 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || |||||||| || || ||| |||| || ||||||||||| || Sbjct 1043 AAAGTCCTTCCATCTTCCAGCTGCTTGCCTGCAAAAATCAGCCTCTGCTGATCGGGAGGG 1102 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || || ||| || || | | ||| || ||| ||| | Sbjct 1103 ATTCCTTCCTTATCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGACT 1162 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || || |||| |||||||| || |||||||| Sbjct 1163 TCCAGAGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 1209 >seq1864 Length=9564 Score = 89.7 bits (98), Expect = 4e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||||||||||||||| ||||||| |||| || | ||||| |||||||| || Sbjct 3408 GTCGACTCCTTTTGAATATTGTAGTCCGCCAGTGTTCTGCCATCCTCAAGCTGTTTGCCT 3467 Query 18905 GCATAAATAAGTCTCTGCTGATCC 18928 ||| | || | ||| ||||||||| Sbjct 3468 GCAAAGATCAATCTTTGCTGATCC 3491 >seq156471 Length=3476 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || || ||||| || ||||||||||||| |||| || | ||||| || ||||| || Sbjct 2096 GTCGATTCTTTTTGTATGTTGTAATCCGCCAGTGTTCTGCCATCCTCGAGTTGTTTGCCT 2037 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | ||| ||||||||| || | || || ||||| ||||| || Sbjct 2036 GCAAAAATCAATCTTTGCTGATCCGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTC 1977 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | |||| || ||| ||| || | || ||||| || || || || || Sbjct 1976 ACATTGTCGACTGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTCCCCGTCAAGGTC 1917 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||| ||||| Sbjct 1916 TTCACAAAAATCTGCAT 1900 >seq55212 Length=5247 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| || |||| || | || || ||||| || ||||||||||| || Sbjct 2983 CCACCTCTCAACCTCAAAACCAGATGTAGGGTCGATTCCTTCTGGATATTGTAATCAGCT 2924 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| ||||||| || || || || ||| | || | | |||||| || || Sbjct 2923 AGGGTTCGACCGTCCTCGAGTTGCTTCCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGG 2864 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | ||| || ||||| ||| || || || | | ||| ||||| | || ||| Sbjct 2863 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTATC-CGAGCTCTCAAC 2805 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||| |||||||| || || | ||||| ||||||||||||||| Sbjct 2804 TTCAAGGGTGATGGTTTTTCCGGTGAGCGTTTTCACAAAAATTTGCATT 2756 >seq21302 Length=5313 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || |||||||| || ||||||||||||| ||| || | || || |||||||| || Sbjct 4192 GTCGATTCCTTTTGTATGTTGTAATCCGCCAGCGTTCTGCCATCTTCAAGCTGTTTGCCT 4133 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||||||||| || | || || ||||| |||||| || Sbjct 4132 GCAAAGATCAACCTCTGCTGATCCGGAGGGATCCCTTCCTTGTCTTGTATTTTCGCCTTA 4073 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | |||| || ||| ||| || | || ||||| || || || || || Sbjct 4072 ACATTGTCGACTGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTC 4013 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||| ||||| Sbjct 4012 TTCACAAAAATCTGCAT 3996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413608378777144