Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq38014 91.5 9e-14 seq169900 84.2 1e-11 seq53616 84.2 1e-11 >seq38014 Length=3548 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 ||||| | | || || ||||||||||||||||||||| ||||| || ||||| || | | Sbjct 983 CCGCCGCGCAGCCTCAGCACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCCGCC 1042 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| | | || |||| ||||| || ||| || | | ||||| || | || Sbjct 1043 AAAGTCCTTCCATCTTCCAGCTGCTTGCCTGCAAAAATCAGCCTCTGCTGATCGGGAGGG 1102 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || | | ||||| || || | | ||||||||| | | Sbjct 1103 ATTCCTTCCTTATCCTGGATCTTCGCC---TTCACGTTGTCGATCGTGTCGGAGCTCTCG 1159 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| ||||| || || || || ||||| ||||| |||||||| Sbjct 1160 ACTTCCAGAGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 1209 >seq169900 Length=516 Score = 84.2 bits (92), Expect = 1e-11 Identities = 153/217 (71%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT-TGGTCAT 33218 |||||| || | || ||||||||||| || ||||| |||| ||| |||| || ||| Sbjct 222 CACCAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAGTCAG-CAA---GAGTGCGGCCAT 277 Query 33219 C--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTT 33275 | ||| |||||||| || || | |||||| ||||| | ||| ||||||||||| | Sbjct 278 CTTCAAGCTGCTTTCCGGCGAAGATCAGACGTTGTTGGTCAGGGGGGATGCCTTCTTTGT 337 Query 33276 CGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 | || | ||| || || | | ||| || ||| | || || || || || | Sbjct 338 CTTGAATTTTGGCC---TTCACGTTATCAATAGTATCGGAGCTTTCGACTTCGAGGGTGA 394 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | |||||||| || || ||||| ||||| |||||||| Sbjct 395 TGGTTTTTCCGGTTAGGGTTTTAACGAAGATTTGCAT 431 >seq53616 Length=2978 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||||||||| ||||| || ||||| || | |||| | | || ||| Sbjct 1733 ACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCCGCCAAAGTCCTTCCATCTTCC 1674 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||| || || || | | ||||| || | || || ||||| || || | Sbjct 1673 AGCTGCTTGCCTGCGAAAATCAGTCTCTGCTGATCGGGAGGGATTCCTTCCTTATCCTGA 1614 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| | || || | | ||||||||| | | || |||||||| ||||| || Sbjct 1613 ATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGACTTCCAGAGTGATCGTCTTC 1554 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| ||||| |||||||| Sbjct 1553 CCAGTTAGGGTTTTGACGAAGATTTGCAT 1525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318036027270648