Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1864 95.1 9e-15 seq156471 86.0 4e-12 seq21302 86.0 4e-12 >seq1864 Length=9564 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||||| | ||| | ||| || || ||| ||||||||||| || || Sbjct 3378 CCACCTCTCAATCGCAGCACGAGATGGAGGGTCGACTCCTTTTGAATATTGTAGTCCGCC 3437 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | ||||| |||||||| ||||| | |||||| ||| |||| Sbjct 3438 AGTGTTCTGCCATCCTCAAGCTGTTTGCCTGCAAAGATCAATCTTTGCTGATCCGGAGGG 3497 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||| || ||| ||| ||| || || || | | || |||| ||| || Sbjct 3498 ATACCTTCCTTGTCTTGAATCTTTGCCTTCACATTATCGATGGTGTCTGAACTCTCAACC 3557 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || || || |||||||||||||| ||||| Sbjct 3558 TCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAATATCTGCAT 3604 >seq156471 Length=3476 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||||| | ||| | ||| || || |||||||| || || ||||| Sbjct 2126 CCACCTCTCAATCGCAGCACAAGATGAAGGGTCGATTCTTTTTGTATGTTGTAATCCGCC 2067 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | |||||| |||||||| ||||| | |||||| ||| |||| Sbjct 2066 AGTGTTCTGCCATCCTCGAGTTGTTTGCCTGCAAAAATCAATCTTTGCTGATCCGGAGGG 2007 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||| || ||| |||||| || || | | || || || | ||| || Sbjct 2006 ATACCTTCCTTGTCTTGGATTTTTGCCTTCACATTGTCGACTGTGTCGGAGCTCTCAACC 1947 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || || || ||||||||||| || ||||| Sbjct 1946 TCCAAAGTGATGGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGCAT 1900 >seq21302 Length=5313 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | || || || || || ||||| || ||||| ||| |||| | ||||||| Sbjct 4380 CATCTTCGAGCTGCTTACCGGCGAAGATCAATCGCTGCTGATCCGGAGGAATCCCTTCTT 4321 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| ||| ||| ||| || || ||| || |||| ||| || || | || | Sbjct 4320 TGTCTTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAACTCTCAACCTCAAGAGTTA 4261 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || ||||| ||||||||||| |||||||| Sbjct 4260 TGGTTTTTCCAGTTAACGTCTTCACAAAGATTTGCAT 4224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353952280425648