Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq26240 120 3e-22 seq1108 105 6e-18 seq55212 98.7 8e-16 seq53616 95.1 1e-14 seq109020 89.7 4e-13 seq35801 87.8 2e-12 seq156471 84.2 2e-11 >seq26240 Length=11166 Score = 120 bits (132), Expect = 3e-22 Identities = 182/252 (72%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | ||| || || || ||| |||||| || |||||||| || || Sbjct 9096 ACCACCACGGAGCCTGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 9155 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || ||||||| ||||| || ||| || | || || | |||||| ||| | Sbjct 9156 -AAGGGTGCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGGG 9214 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | |||||||||| || || ||||| | | || ||||| |||| ||| Sbjct 9215 GAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTC 9272 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCTTG 48735 | ||||| || ||||| || |||||||||||||||||||| ||||||||| ||| ||| Sbjct 9273 CACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC-TGTATTG 9331 Query 48736 ATCGAAGAAAGA 48747 ||||| |||| Sbjct 9332 -TCGAAACAAGA 9342 >seq1108 Length=4941 Score = 105 bits (116), Expect = 6e-18 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| || | || ||||||| |||||||| ||| || | Sbjct 833 CTCCTTCTGGATGTTGTAATCGGCTAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAA 892 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || ||||||||||| ||| || | | ||||| ||| || || ||||| | Sbjct 893 GATCAAACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTT 952 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| |||| |||| ||||| || ||||| || |||||||| |||||| Sbjct 953 GTCG--ATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTTTTC 1010 Query 48713 ACAAAAATCTGCATCGTGTCTTGATCGAAGAAAGA 48747 ||||| ||||||||| | | ||| || || ||||| Sbjct 1011 ACAAAGATCTGCATC-TCTATTG-TCAAAAAAAGA 1043 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | ||| | ||| || || ||||| || ||||||||||| ||| Sbjct 114 CCTCCTCTCAGCCTCAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGGCC 173 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| |||||||| || | | || || | |||||||||| || Sbjct 174 AAGGTACGACCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGA 233 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| ||| || ||||| | | ||||| |||| |||| | Sbjct 234 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCCACC 293 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | |||||||| || || || || || ||||||||||||||||| Sbjct 294 TCCAAAGTTATGGTCTTTCCTGTAAGGGTCTTCACAAAAATCTGCAT 340 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||| | ||| ||||| || || |||||| || ||||||||||| | | Sbjct 570 CCTCCACGGAGCCTCAGCACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAATCCG-C 628 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || ||||||| |||||||| || || | || | | |||||| ||| || Sbjct 629 AAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCCGGGGG 688 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || || ||||| | ||||| |||| |||| Sbjct 689 AATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTGTCGGAGCTCTCCAC 748 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || |||||||| ||||| || || ||||||||| Sbjct 749 CTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACGAAGATCTGCATC 797 >seq55212 Length=5247 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | |||||| || || | ||| || || ||||| || || ||||||||||| Sbjct 2983 CCACCTCTCAACCTCAAAACCAGATGTAGGGTCGATTCCTTCTGGATATTGTAATCAGCT 2924 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| ||||||| || ||||| || | | || ||||||||||| || || Sbjct 2923 AGGGTTCGACCGTCCTCGAGTTGCTTCCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGG 2864 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||||| ||| || ||||| | | |||||||| | ||| Sbjct 2863 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTATCCGAGCTCTCAACT 2804 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || |||||||| |||||||| |||||||||||||| ||||| Sbjct 2803 TCAAGGGTGATGGTTTTTCCGGTGAGCGTTTTCACAAAAATTTGCAT 2757 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | |||||| || || | |||||| || |||||| ||||| ||||||||||| Sbjct 3464 CCACCTCTCAACCTCAAAACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAATCAGCT 3405 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | | | | || || |||||||| || | | || || ||||| || ||| || Sbjct 3404 AGCGTCCTCCCATCTTCTAGCTGCTTCCCAGCAAAGATCAAGCGCTGTTGGTCCGGAGGA 3345 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||| ||| ||| || ||||| | | || || || | | || Sbjct 3344 ATTCCTTCCTTATCCTGAATCTTTGCCTTGACATTGTCAATCGTGTCTGAACTTTCAACT 3285 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| ||| ||||| || || || ||||| ||||| |||||||||||| Sbjct 3284 TCGAGTGTAATGGTCTTTCCAGTAAGAGTCTTCACGAAAATCTGCATC 3237 >seq53616 Length=2978 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| ||||| |||||||| || || ||| | ||||||| |||||||| ||| || Sbjct 1260 CTCCTTCTGAATATTGTAATCTGC-AAGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCGA 1202 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 | || | |||||||| ||| || | | |||||| ||| ||| ||| ||||| | Sbjct 1201 AGATCAGCCGCTGCTGGTCCGGTGGAATTCCTTCCTTATCCTGAATCTTCGCCTTGACGT 1142 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTT 48710 | || || || |||| || | || | || | ||||||||||| ||||| || |||| Sbjct 1141 TGTCG--ATCGTGTCGG-AGCTTTCGACCTCTAGGGTTATGGTTTTTCCGGTTAGGGTTT 1085 Query 48711 TCACAAAAATCTGCAT 48726 |||| || |||||||| Sbjct 1084 TCACGAAGATCTGCAT 1069 >seq109020 Length=336 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| ||||||||||| || | ||| || | ||||| ||||| Sbjct 258 ATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGGCCATCCTCAAGCTG 199 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||||| || | | ||||||||| || || Sbjct 198 CTTGCCGGCGAAGATCAGGCGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGGATCTT 139 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | |||||||||| ||||| |||| || ||||| || ||||| Sbjct 138 GCTCTTGACGTTGTCAATGGTATCGGAGGACTCGACTTCGAGAGTGATGGTCTTGCCGGT 79 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || |||||||| Sbjct 78 CAGAGTCTTTACGAAGATCTGCAT 55 >seq35801 Length=8898 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| || | ||| ||||||| |||||||| ||| || | Sbjct 6161 CTCCTTCTGGATGTTGTAATCCGCAAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 6102 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | | |||||||||| ||| || ||| | | Sbjct 6101 GATGAGGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATT 6042 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| || || ||| | || || || ||||| ||||| || || || Sbjct 6041 GTCGATGGTGTCGGAGGATTCAACCTCCAAGGTGATCGTCTTACCCGTGAGGGTCTTGAC 5982 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 5981 GAAGATCTGCATC 5969 >seq156471 Length=3476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| ||||| |||||||| || | || | || || Sbjct 2337 CACAAGATGAAGGGTCGACTCCTTCTGAATATTGTAATCGGCAAGAGTTCTGCCATCTTC 2278 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||| || | || || |||||||||||| || | | ||| ||||| Sbjct 2277 GAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCCGGAGGAATCCCTTCTTTGTCTTG 2218 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | | ||||| || | | ||| ||| | ||||||||||| Sbjct 2217 AATCTTTGCCTTAACATTATCGATGGTGTCTGAACTCTCAACCTCCAGAGTTATGGTTTT 2158 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || | || |||||||| ||||||||| Sbjct 2157 TCCAGTCAAGGTCTTCACAAAGATCTGCATC 2127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420271242806876