Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq16975 122 5e-23 seq13760 120 2e-22 seq43449 116 2e-21 seq660 116 2e-21 seq83048 114 7e-21 seq7912 114 7e-21 seq31604 113 2e-20 seq14484 111 8e-20 seq39251 109 3e-19 seq16248 109 3e-19 seq30276 93.3 2e-14 seq30005 87.8 9e-13 >seq16975 Length=6013 Score = 122 bits (134), Expect = 5e-23 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| || |||| ||| ||||||||| | || |||||||| ||||||| ||||||||| Sbjct 1096 AATTAAAAATAAATAAAAATGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTA 1037 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 |||| ||||||| |||||||||||||||||||| | || || Sbjct 1036 GCACCACGCTCTAACCAACTGAGCTAATGGGCCTTTGATGA 996 >seq13760 Length=1412 Score = 120 bits (132), Expect = 2e-22 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| || |||| ||| ||||||||| | || |||||||| ||||||| ||||||||| Sbjct 692 AATTAAAAATAAATAAAAATGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTA 633 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||| |||||||||||||||||||| Sbjct 632 GCACCACGCTCTAACCAACTGAGCTAATGGGCC 600 >seq43449 Length=4015 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 413 AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 472 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 473 CAACTGAGCTAATGGGCC 490 >seq660 Length=11007 Score = 116 bits (128), Expect = 2e-21 Identities = 79/89 (89%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 8772 AATAAAAAA---AAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 8716 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 8715 GACGCTCTAACCAACTGAGCTAATGGGCC 8687 >seq83048 Length=3362 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAA--ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||||| || || ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 3070 AATAAAAATAATAAAGGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGC 3011 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 3010 ACGACGCTCTAACCAACTGAGCTAATGGGCC 2980 >seq7912 Length=5448 Score = 114 bits (126), Expect = 7e-21 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 3063 AAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 3122 Query 11512 CAACTGAGCTAATGGGCCGT 11531 |||||||||||||||||||| Sbjct 3123 CAACTGAGCTAATGGGCCGT 3142 >seq31604 Length=5906 Score = 113 bits (124), Expect = 2e-20 Identities = 81/93 (87%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 11438 ATTAATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||| | ||| | ||| ||||||||| | | |||||||| ||||||||||||||||| Sbjct 961 ATTAAAAGAAATAAAAAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTA 1020 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 1021 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 1053 >seq14484 Length=4791 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 19 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 78 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 79 CTGAGCTAATGGGCC 93 >seq39251 Length=12515 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 8487 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8428 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 8427 TGAGCTAATGGGCC 8414 >seq16248 Length=5232 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1014 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1073 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1074 TGAGCTAATGGGCC 1087 >seq30276 Length=7643 Score = 93.3 bits (102), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||||| || | ||| || |||||| | | || ||||| ||||||||||||||||| Sbjct 3478 TTAATAATAATTAAAAGAATGTCCCATGCAGGTCTCAAACCTGCGACCTTCGCGTTATTA 3537 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGC 11528 |||||||||||| |||| |||||||||| ||| Sbjct 3538 GCACGACGCTCTAACCAGCTGAGCTAATAGGC 3569 >seq30005 Length=9301 Score = 87.8 bits (96), Expect = 9e-13 Identities = 67/75 (89%), Gaps = 4/75 (5%) Strand=Plus/Minus Query 11457 GGCCCATGAAAGGATCGAACCTT-CGACC-TTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||| | || |||||||| ||||| |||||||||||||||||||||||| ||||| Sbjct 4046 GGCCCATGCA-GGTTCGAACCTGGCGACCATTCGCGTTATTAGCACGACGCTCTAACCAA 3988 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 3987 -TGAGCTAATGGGCC 3974 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260882892694576