Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq452 576 4e-160 seq165807 551 2e-152 seq3541 215 1e-51 seq8266 141 3e-29 seq112378 131 5e-26 >seq452 Length=65819 Score = 576 bits (638), Expect = 4e-160 Identities = 717/977 (73%), Gaps = 4/977 (0%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || |||||||| ||||| ||||| | || |||||||| || | ||||| ||| Sbjct 10748 TGGATAACCAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 10689 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | || ||| || ||||| | ||||| || || || || || |||||| Sbjct 10688 ACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGAT 10629 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || ||||| || ||||| || || || | |||||||||||||||||||| Sbjct 10628 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCA 10569 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | |||| | || || || || |||||||||| || ||||||||||| Sbjct 10568 GGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAGCA 10509 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | | | ||||| |||||||||||||| ||||| ||| |||| |||| | |||||| Sbjct 10508 GCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTC 10449 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| | || ||||| ||| ||| | ||||||| || || | | || || ||| Sbjct 10448 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTTTGGGTATG 10389 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| || || ||| |||| || | |||| ||| ||||| ||||| Sbjct 10388 CGCCCTTGGATTGCTGTTGCGTATTCAGCTCCTGTTGCAGCTGCTACCGCTGT-TTTCTT 10330 Query 19719 GTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTAC 19777 | | |||||| |||| ||||| |||||| ||||||||||||||| || || |||||||| Sbjct 10329 GATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTAC 10270 Query 19778 TTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACAT 19837 ||| ||||| ||| | |||||||| || || ||||| ||||||||||| || || || || Sbjct 10269 TTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATAT 10210 Query 19838 GCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGT 19897 | | ||||| ||||| |||||||| || || || ||| ||||||||| || ||||| Sbjct 10209 GTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 10150 Query 19898 TACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTT 19957 ||||| | |||| |||||| || || ||| ||| || | || || | || Sbjct 10149 AACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATT 10090 Query 19958 CGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGAT 20017 ||| ||||| ||||| || |||||||| || ||||| || || |||||||| ||||||| Sbjct 10089 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGCCGATTGAT 10030 Query 20018 ATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCC 20077 || ||||||||| |||||| || |||||||| ||||| ||||| | ||| ||| || Sbjct 10029 CTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCC 9970 Query 20078 CGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGG 20137 || || || || ||| | || | | || ||| |||| |||||||||||||| ||||| Sbjct 9969 TGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAACCTAAATGG 9910 Query 20138 TTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTG 20196 ||| || || ||||| || ||||||||| ||||| || |||| || ||||||| Sbjct 9909 TTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGCCGTGTAATTAATACTTGGGCTG 9851 Query 20197 ATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACT 20256 || | | || | |||||||| || | ||||||||||| || || ||||||||||||| Sbjct 9850 ATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACT 9791 Query 20257 TCCCACTTGATTTAGCT 20273 |||| || || ||||| Sbjct 9790 TCCCTCTAGACCTAGCT 9774 >seq165807 Length=4432 Score = 551 bits (610), Expect = 2e-152 Identities = 719/987 (73%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| |||||| | || |||||||| || | Sbjct 2956 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 3015 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||||||| ||| | | || ||| || ||||| |||| || || || || || Sbjct 3016 ATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCT 3075 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || ||||| || ||||| || ||||| || ||||| || || || | || ||||||||| Sbjct 3076 CCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 3135 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || |||||||| || | |||| | || || ||||| |||||||||| || || Sbjct 3136 ATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATA 3195 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 ||||||| ||||| | | ||||| |||||||||||||||||||| ||| | || |||| Sbjct 3196 TGGGAAG-CGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGT 3254 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| || | |||||||||| || | | Sbjct 3255 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCG 3314 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| | || ||||| || |||||| |||| || | | || ||| ||| Sbjct 3315 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGC 3374 Query 19709 TGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 ||| ||||| | |||| ||| | || ||||| |||||| ||||| |||||||| || | Sbjct 3375 TGT-TTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAA 3433 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 ||||||||||||||||||||||| | |||||||| || || ||||| ||||||||||| | Sbjct 3434 TCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 3493 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | || |||||| | || || ||||| |||||||| || || || ||| ||||||||| | Sbjct 3494 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 3553 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | |||||| || || | |||| |||||| || || ||| ||| || | | Sbjct 3554 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 3613 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 | || | || || ||||| ||||| || |||||||| || || || || || || |||| Sbjct 3614 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 3673 Query 20008 GGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | ||||||| || ||||||||| ||| || || |||||||||||||||||||| | | Sbjct 3674 GCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAG 3733 Query 20068 CTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCA 20127 || ||| || || || || || ||| | || | | || || ||||||||||||||| Sbjct 3734 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 3793 Query 20128 ACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCA 20186 | || |||||||| || || ||||| || ||||||||| ||||| || |||| Sbjct 3794 ATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAAT 3852 Query 20187 ACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAAT 20246 || ||||||||| | | || | |||||||| || | ||||||||||| || || ||| Sbjct 3853 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 3912 Query 20247 GCTCATAACTTCCCACTTGATTTAGCT 20273 |||||||| ||||| || || ||||| Sbjct 3913 GCTCATAATTTCCCTCTAGACCTAGCT 3939 >seq3541 Length=30046 Score = 215 bits (238), Expect = 1e-51 Identities = 263/358 (73%), Gaps = 3/358 (1%) Strand=Plus/Plus Query 19773 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTC 19832 |||||||| ||||| ||| | |||||||| || || ||||| ||||||||||| || || Sbjct 15372 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 15431 Query 19833 CACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGT 19892 || ||| | ||||| ||||| |||||||| || || || ||| ||||||||| || Sbjct 15432 CATATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 15491 Query 19893 TTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTAT 19952 ||||| ||||| | |||| || | | || ||| ||| || | || || Sbjct 15492 TTGGTAACTTCTAGTTTGATCAGGGGGAAA---GAAAATGAATCTGCTAATGAAGGTTAC 15548 Query 19953 AAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGA 20012 | ||||| ||||| ||| | || |||||||| || ||||| || || |||||||| || Sbjct 15549 AGATTCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGCCGA 15608 Query 20013 TTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACT 20072 ||||| || ||||||||| |||||| || |||||||| ||||| ||||| || ||| || Sbjct 15609 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCT 15668 Query 20073 TTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACC 20130 | || || || || || ||| | || | | || ||| |||| ||||||||||||| Sbjct 15669 TGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAACC 15726 >seq8266 Length=1953 Score = 141 bits (156), Expect = 3e-29 Identities = 230/330 (70%), Gaps = 22/330 (7%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || |||||||| ||||| ||||| | || |||||||| || | ||||| ||| Sbjct 849 TGGATAACCAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTT-TGATGAT-CCT 906 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 | || | | || ||| || | ||||| ||||| || || || || || |||||| Sbjct 907 AACCTATTGACCGCAACTTCT-GTTTTATT---GCCTTCATTGCTGCTCCTCCAGTAGAT 962 Query 19419 ATAGATGGCATACGTGAG----------------CCAGTTTCCGGCTCGTTAATGTACGG 19462 || ||||| || ||||| || ||||| || || || | ||||| Sbjct 963 ATTGATGGTATTCGTGAAACCGTTTCGGATTGAACCTGTTTCTGGATCTCTACTTTACGG 1022 Query 19463 AAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTA 19522 ||||||||||||||| || || | |||| | || || || || |||||||||| Sbjct 1023 AAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTA 1082 Query 19523 TCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACT 19582 || ||||||||||| | | | ||||| |||||||||||||| ||||| ||| |||| Sbjct 1083 CCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACT 1142 Query 19583 TGTTGTCTTCCACTTCTTAATAGGAGTAGC 19612 |||| | ||||||||| | || ||||| Sbjct 1143 AATTGTTCTACACTTCTTACTTGGTGTAGC 1172 >seq112378 Length=4714 Score = 131 bits (144), Expect = 5e-26 Identities = 153/204 (75%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 19722 TACCCATTTGGGCAAGGGAGTTTTAG-TGATGGTATGCCTCTTGGTATCTCTGGTACTTT 19780 |||||| |||| ||||| |||||| ||||||||||||||| || || ||||||||||| Sbjct 2503 TACCCAATTGGTCAAGGAAGTTTTTCCTGATGGTATGCCTCTAGGAATTTCTGGTACTTT 2562 Query 19781 TAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCT 19840 ||||| ||| | ||||||||| |||| |||| |||||| || || || ||| | Sbjct 2563 CAACTTCATGATTATATTCCAAG-----CACAGCATCC-TATGCACCCATTTCATATGTT 2616 Query 19841 CGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTAC 19900 ||||| ||||| |||||| |||| || || ||| || |||||| || ||||| || Sbjct 2617 GGGTGTAGCTGGTGTATTCAGTGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGTAAC 2676 Query 19901 TTCCTCGATCATCAAGGAAACAAC 19924 ||| | |||| |||||| || Sbjct 2677 TTCTAGTTTGATCAGGGAAACCAC 2700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144114201086256