Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq452 544 1e-149 seq165807 482 4e-131 seq3541 188 1e-42 seq8266 107 3e-18 seq112378 104 4e-17 >seq452 Length=65819 Score = 544 bits (602), Expect = 1e-149 Identities = 720/996 (72%), Gaps = 5/996 (1%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 |||||| ||||| |||| || | ||| | | || |||| |||||||||||| | Sbjct 10757 TTCTGCAACTGGATAACCAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 10698 Query 211630 ATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACC 211688 |||||||| | ||| | | | ||||| | ||||| | || ||||| || || || Sbjct 10697 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCC 10639 Query 211689 TCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAA 211748 ||| || ||||| || || || |||||||| || |||| || | | || || ||||| Sbjct 10638 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 10579 Query 211749 CATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTAT 211808 || || || ||||| || |||| |||| || |||||||| ||||| || || || Sbjct 10578 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 10519 Query 211809 CTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAAT 211868 ||||||||||||| | ||||||| ||| | ||||| ||||||||||| | | | | Sbjct 10518 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 10459 Query 211869 CTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCG 211928 | |||||| | | || | | |||||||| | ||||||| ||| | ||| Sbjct 10458 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 10399 Query 211929 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGC 211988 ||| |||||||| |||||||| |||||| |||||||| ||||| |||| ||| ||| Sbjct 10398 TTTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGCTCCTGTTGCAGCTGCTACCGC 10339 Query 211989 TGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTAT 212048 ||| ||| | | |||||| | ||||| || || || || ||||||||| |||| || Sbjct 10338 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 10279 Query 212049 ATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCC 212108 || || || |||||||||||| | |||||||| || || || ||||||||||||||||| Sbjct 10278 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 10219 Query 212109 ATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGG 212168 ||| |||||| |||||| || ||| | ||||| || | ||||| ||||||||| || Sbjct 10218 ATTTCATATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 10159 Query 212169 TTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGG 212228 ||| | || || ||| | ||| | |||||||| | || || || | || Sbjct 10158 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 10099 Query 212229 TTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGG 212288 ||||| ||||| ||||| ||||| || ||||| ||||| ||||| ||||| ||||| || Sbjct 10098 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGG 10039 Query 212289 TAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGC 212348 || | |||||||| ||||| ||||||||| | |||||||||||| | || Sbjct 10038 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 9979 Query 212349 ATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAA 212408 | |||||||| | || | ||||| || || | |||||| |||| ||||| ||||| Sbjct 9978 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAA 9919 Query 212409 CCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTAC 212468 ||||||||| ||||| ||||||||||| || |||||| ||| || || ||| Sbjct 9918 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATAC 9859 Query 212469 TTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGC 212528 ||||| |||| | | ||| | || ||||||||||||||||||||||| ||| | ||||| Sbjct 9858 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 9799 Query 212529 ACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564 || |||||||| || ||| ||| |||||| ||| Sbjct 9798 TCATAACTTCCCTCTAGACCTAG---CTGCTATCGA 9766 >seq165807 Length=4432 Score = 482 bits (534), Expect = 4e-131 Identities = 675/947 (71%), Gaps = 0/947 (0%) Strand=Plus/Plus Query 211606 TATGTTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTT 211665 ||| |||| |||||||||||| | ||||| || | | | | ||||| | ||| Sbjct 2992 TATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTCTGTATTT 3051 Query 211666 ATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCT 211725 || | || ||||| || || ||||| || || || || || || |||||||| || || Sbjct 3052 ATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCT 3111 Query 211726 GGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCA 211785 || || | | ||||| ||||| ||||| |||||||| || |||| |||| || Sbjct 3112 GGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCT 3171 Query 211786 ATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAAT 211845 || || || ||||| || || || |||||||| ||| | ||||||| ||| | ||||| Sbjct 3172 ATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAAC 3231 Query 211846 GGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGA 211905 || |||||||| || | | | | |||||| | | || | | |||||||| Sbjct 3232 GGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGG 3291 Query 211906 AGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCA 211965 | ||||||||||| | |||| | ||||||||||||||||| |||||| |||||| Sbjct 3292 CGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 3351 Query 211966 GCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTC 212025 || ||||| | || ||| ||||| ||| | |||| ||| ||||||| || || Sbjct 3352 GCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTT 3411 Query 212026 TCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCA 212085 || || || |||||| |||| || || || || || ||||| ||| | |||||||| || Sbjct 3412 TCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCT 3471 Query 212086 GAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGA 212145 || || |||||||||||||||||||| || ||| ||| || || ||| | ||||| || Sbjct 3472 GAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGC 3531 Query 212146 GCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACT 212205 | ||||| ||||||||| |||||| | || || ||| | ||| | |||||||| Sbjct 3532 TCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACA 3591 Query 212206 GGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATC 212265 | || || || | ||||||| || || ||||| ||||| || ||||| ||| Sbjct 3592 GAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATC 3651 Query 212266 GTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGC 212325 || || || ||||| || || || || | |||||||| ||||| || |||||| Sbjct 3652 GTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCT 3711 Query 212326 AGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATG 212385 | |||||| |||||| | || | |||||||| | || | ||||| || || | Sbjct 3712 CGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 3771 Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 ||||| |||| ||||| ||||| |||||||| ||||| ||||||||||| || |||||| Sbjct 3772 GGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 3831 Query 212446 GCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATG 212505 |||| || || ||| |||| |||| || ||||| | || |||||||||||| Sbjct 3832 AGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATG 3891 Query 212506 GAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||||| ||| | ||||| || || ||||| || ||| |||| Sbjct 3892 GAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 3938 >seq3541 Length=30046 Score = 188 bits (208), Expect = 1e-42 Identities = 259/361 (72%), Gaps = 7/361 (2%) Strand=Plus/Plus Query 212052 AGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATT 212111 ||| || |||||||||||| | |||||||| || || || |||||||||||||||||||| Sbjct 15371 AGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 15430 Query 212112 CCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTC 212171 |||||| |||||| || ||| | ||||| || | ||||| ||||||||| ||||| Sbjct 15431 TCATATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC 15490 Query 212172 TCTTGTTACATCTTCACTTATCCGTG--AAACCACTGGTTTAGATTCACAGAACTATGGT 212229 | || || ||| | ||| | | ||| | | | || || | ||| Sbjct 15491 CTTGGTAACTTCTAGTTTGATCAGGGGGAAAGAAAATG-----AATCTGCTAATGAAGGT 15545 Query 212230 TACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGT 212289 |||| ||||| ||||| ||| | || ||||| ||||| ||||| ||||| ||||| || Sbjct 15546 TACAGATTCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGC 15605 Query 212290 AGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCA 212349 || | |||||||| ||||| ||||||||| | |||||||||||||| || Sbjct 15606 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCT 15665 Query 212350 TCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAAC 212409 | |||||||| | || | ||||| || || | |||||| |||| ||||| |||||| Sbjct 15666 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAAC 15725 Query 212410 C 212410 | Sbjct 15726 C 15726 >seq8266 Length=1953 Score = 107 bits (118), Expect = 3e-18 Identities = 208/303 (69%), Gaps = 22/303 (7%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 |||||| ||||| |||| || | ||| | | || |||| |||||||||||| | Sbjct 840 TTCTGCAACTGGATAACCAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTT-TG 898 Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCT 211689 ||||||| | || | | ||||| | || ||||| | | ||||| || || ||| Sbjct 899 ATGATCCTAAC-CTATTGACCGCAACTTC-TGTTTTATTG---CCTTCATTGCTGCTCCT 953 Query 211690 CCCGTTGATATCGACGGAATCCGTGAACCAGT----------AGCTGGTTC---AT---T 211733 || || ||||| || || || |||||| | || | ||| ||| || | Sbjct 954 CCAGTAGATATTGATGGTATTCGTGAAACCGTTTCGGATTGAACCTGTTTCTGGATCTCT 1013 Query 211734 CATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTT 211793 | || || ||||| || || || ||||| || |||| |||| || |||||||| Sbjct 1014 ACTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTT 1073 Query 211794 ACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCC 211853 ||||| || || ||||||||||||||| | ||||||| ||| | ||||| |||||||| Sbjct 1074 GCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCC 1133 Query 211854 TTA 211856 ||| Sbjct 1134 TTA 1136 >seq112378 Length=4714 Score = 104 bits (114), Expect = 4e-17 Identities = 146/204 (72%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 212002 TACCCATTCGGTCAGGGTTCATTCTCA-GACGGTATGCCTTTAGGTATATCAGGAACATT 212060 |||||| | ||||| || || || || ||||||||| |||| || || || || || Sbjct 2503 TACCCAATTGGTCAAGGAAGTTTTTCCTGATGGTATGCCTCTAGGAATTTCTGGTACTTT 2562 Query 212061 CAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGC 212120 |||||||||| | ||||||||||| | ||| | |||||||||||| |||||| Sbjct 2563 CAACTTCATGATTATATTCCAAGCACAGCAT------CCTATGCACCCATTTCATATGTT 2616 Query 212121 AGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTAC 212180 ||||| || ||| | ||| |||| | ||||| || |||||| ||||| | || || Sbjct 2617 GGGTGTAGCTGGTGTATTCAGTGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGTAAC 2676 Query 212181 ATCTTCACTTATCCGTGAAACCAC 212204 ||| | ||| | |||||||| Sbjct 2677 TTCTAGTTTGATCAGGGAAACCAC 2700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 805628413670560