Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq87019 163 4e-35 seq111052 104 3e-17 seq136600 100 4e-16 seq42153 100 4e-16 seq6256 87.8 2e-12 >seq87019 Length=1933 Score = 163 bits (180), Expect = 4e-35 Identities = 387/576 (67%), Gaps = 8/576 (1%) Strand=Plus/Plus Query 62943 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63002 || ||||| ||||| |||||| | ||||||||||||| | ||||| |||||||||||| Sbjct 1331 ATGATCTCTGTGCATAGATTAGAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTT 1390 Query 63003 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63062 ||||||| | |||||| || || ||| | ||| | || ||||||||||| | ||| | | Sbjct 1391 CTGTTACAGGAATCCTTGTAGAGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAA 1450 Query 63063 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTAT 63122 || || ||| | | || ||||| | | | | || | | ||| | || Sbjct 1451 ATAGCAAACCACA-GCTTCTGTGCTTTAACA-ACACTCCTAGATTTTCCCTCAGACTCAT 1508 Query 63123 AG--TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCA 63179 || ||| ||||| || |||| || |||| |||| | ||| ||||| ||| Sbjct 1509 AGCCTGTGTACAACTTCTCAAACTTTTCACCCC-AACAGTCAGCAAGGCCAGGGGCCTCA 1567 Query 63180 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 63239 | || || | || ||||| || || | || | ||| || ||||| || | ||| || Sbjct 1568 TTAGGGCAAAACAGGGACCAATCCCCATTCTCTTGCACACGCTTCATGAACAAATCTGGG 1627 Query 63240 ATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63298 |||||||| || || || | ||||| | ||| | || || ||||| |||||| | Sbjct 1628 ATCCAAAG-GCCGTAGAACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCTTCCT 1686 Query 63299 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63358 | || || | | | ||||| | |||||| || ||||| || || || | | | || Sbjct 1687 CAAGTCTAGCCAATCAAATATATCTGCATGCCATGGCTCCAAATAAATAGCAAAAGCACC 1746 Query 63359 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63418 | |||| ||| |||||||||| ||||| ||| |||| ||| | || |||| ||| Sbjct 1747 CTTTCTTTTGCCTCCACCCTGATCTACGTATCGAGCTGTGTCATTGAACACCCTCAGCAT 1806 Query 63419 TGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT 63478 |||| || || || ||| ||||||| || || || ||||| || | || || || Sbjct 1807 CGGAACTATGCCATTGGATGTACCATTAGTTCCCCTAATGTAGCTGCCCATTGCTCGTAT 1866 Query 63479 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 63514 ||| ||| || | || || || || || |||| Sbjct 1867 ATTGTGAATAGACAATCCAATACCACCCGCAGTTTT 1902 >seq111052 Length=1394 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| |||||||| | |||||||| || || || |||||| ||| || | ||||| Sbjct 1231 AGTTCCAGCATTAAAAAGTGTAGGAGAGGCATGGGTGAACCATCTTTGGGACAATAGATG 1172 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || || | | |||| || || || | ||| || || || || || | ||| || Sbjct 1171 ATATGTTTCGAGAACTGAATCAATGTCATCCTTATGGATGCCAACAGCAACTCTCATCAA 1112 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 ||||||||| || ||||||| | |||| | || || |||| ||| || |||| | Sbjct 1111 CATGTGCTGTGGCCTTTCAATAACCTTGCCTTGTACCTTTAACAGGTAAGACCTTTCAAG 1052 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63825 |||||||| ||||| || | || |||||||| Sbjct 1051 CGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTC 1017 >seq136600 Length=929 Score = 100 bits (110), Expect = 4e-16 Identities = 243/368 (66%), Gaps = 0/368 (0%) Strand=Plus/Minus Query 63471 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63530 || || ||||| ||| || | || || || || || |||| ||| ||| ||| Sbjct 920 GCTCGTATATTGTGAATAGACAATCCAATACCACCCGCAGTTTTGCTTATTTCTGCACAT 861 Query 63531 CGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63590 |||| ||||| ||||||||||| |||||||| || |||| || || || || Sbjct 860 TCCTTTAGAGTGTCGTAGATACCCTCAATGCTATCCTCTTTCATACACAGGAGGAAGCAA 801 Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 || || || | | || ||||| ||||| || | ||||| || || || || ||| Sbjct 800 CTGCTCAACTGAGGTCTACACGTTCCAGCATTGAAAAGAGTAGGCGAGGCATGAGTGAAC 741 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 || || || | | || || || || || | ||| |||| || |||||| Sbjct 740 CAGCCTTGGGACATTGTATGATAGGTACGGATGGCAGCGTCAATATTGTCTTTATGAATA 681 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 || || | || | |||||||||||||||||| ||||| || | ||| || || || Sbjct 680 CCAACAGAAACCCTCATTAACATGTGCTGAGGCCTTTCCACTACCTTCCCATTGATCCTC 621 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63830 | | || || |||||| || || || ||||| || | || |||||||||| || Sbjct 620 AGTAGATAAGACCTTTCCAGGGTCTTGAATCCAAAGTAATCATAGTAAAAGTCTCGGTCA 561 Query 63831 TAAATAAT 63838 ||||| || Sbjct 560 TAAATGAT 553 >seq42153 Length=9390 Score = 100 bits (110), Expect = 4e-16 Identities = 238/351 (68%), Gaps = 9/351 (3%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||||||||||| || || ||||| || | ||| || |||| Sbjct 4842 ACAGCAAGCAAGCGAAATCGCAGTGCAAGCCTTCATCTCTCGAGATCAATTCATTCGAAA 4901 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 |||| || || ||||| || || ||||| || |||||||| |||| ||| || | Sbjct 4902 ACGTCAGCCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAAATGGCGCAGAAGCTCCCGG 4961 Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33472 | |||||||| ||||| || ||| || ||||||| | ||||| | ||| | || Sbjct 4962 AGAAGAAGATCCCTTCAAC-GCACGCGAAGGCAACCAACCTCTC-CGCGAACGTCTCCGA 5019 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 | | | ||||| | | ||||| |||||| | | || ||||| || || || | Sbjct 5020 T-CCGTCGATCCAGCTCAGCGCCCAGCTCGCCTTCCTCTCGACGCAAGGGATGGTGTCGA 5078 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTAT--CTTTAACATAAGTATCGATCAAAAG 33590 | || ||||| | | || || | | || ||| | || || |||| | || Sbjct 5079 TCGCGCGGAAGAGGCGGCTCTTCTC-CTCCGATCACTTGGATGTAGGTCTCGAGGAGGAG 5137 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 || ||||| || || || ||||| || ||||| ||||| || |||||||| Sbjct 5138 GCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAA 5188 >seq6256 Length=4455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || |||||||| |||||||||||| ||| ||||| || || ||||| | Sbjct 1146 CAAGCGAAGTCACAGTGCAGGCCCTCGTCTCTAGAAATCAGTTCATTAGAGAACGTTAAG 1205 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 33401 |||||||| | || | ||||||||||||||| || || Sbjct 1206 CCGGGCATCAATCCCCTCTTTTTAAGCCAAAAAATCGA 1243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621460879128160