Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq87019 178 2e-39 seq111052 104 3e-17 seq33760 102 1e-16 seq42153 100 4e-16 seq136600 91.5 2e-13 >seq87019 Length=1933 Score = 178 bits (196), Expect = 2e-39 Identities = 388/575 (67%), Gaps = 6/575 (1%) Strand=Plus/Plus Query 62798 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 62857 || ||||| ||||| |||||| | ||||||| ||||| | ||||| |||||||||||| Sbjct 1331 ATGATCTCTGTGCATAGATTAGAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTT 1390 Query 62858 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 62917 ||||||| | |||||| || || ||| | ||| | || ||||||||||| | ||| | | Sbjct 1391 CTGTTACAGGAATCCTTGTAGAGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAA 1450 Query 62918 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT 62977 || || ||| | | || ||||| | | | | || | || ||| | || Sbjct 1451 ATAGCAAACCACA-GCTTCTGTGCTTTAACA-ACACTCCTAGATTTTCCCTCAGACTCAT 1508 Query 62978 AG--TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCAT 63035 || ||| ||||| || |||| || |||||| | | || ||||| |||| Sbjct 1509 AGCCTGTGTACAACTTCTCAAACTTTTCACCCCAACAGTCAGCAAGGCCAGGGGCCTCAT 1568 Query 63036 CCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAA 63095 || || | || ||||| || || | || | ||| || ||||| || | ||| || | Sbjct 1569 TAGGGCAAAACAGGGACCAATCCCCATTCTCTTGCACACGCTTCATGAACAAATCTGGGA 1628 Query 63096 TCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 63154 ||||||| || || || | ||||| | ||| | || || ||||| |||||| | Sbjct 1629 TCCAAAG-GCCGTAGAACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCTTCCTC 1687 Query 63155 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63214 | || || | | | ||||| | |||||| || ||||| || || || | | | || Sbjct 1688 AAGTCTAGCCAATCAAATATATCTGCATGCCATGGCTCCAAATAAATAGCAAAAGCACCC 1747 Query 63215 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63274 | |||| ||| |||||||||| ||||| ||| |||| ||| | || |||| ||| Sbjct 1748 TTTCTTTTGCCTCCACCCTGATCTACGTATCGAGCTGTGTCATTGAACACCCTCAGCATC 1807 Query 63275 GGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA 63334 |||| || ||||||||||||||||| || || || ||||| || | || || ||| Sbjct 1808 GGAACTATGCCATTGGATGTACCATTAGTTCCCCTAATGTAGCTGCCCATTGCTCGTATA 1867 Query 63335 TTACTAATTGATAGACCTATTCCCCCTGCCATTTT 63369 || ||| || | || || || || || |||| Sbjct 1868 TTGTGAATAGACAATCCAATACCACCCGCAGTTTT 1902 >seq111052 Length=1394 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| |||||||| | |||||||| || || || |||||| ||| || | ||||| Sbjct 1231 AGTTCCAGCATTAAAAAGTGTAGGAGAGGCATGGGTGAACCATCTTTGGGACAATAGATG 1172 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || || | | |||| || || || | ||| || || || || || | ||| || Sbjct 1171 ATATGTTTCGAGAACTGAATCAATGTCATCCTTATGGATGCCAACAGCAACTCTCATCAA 1112 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||| || ||||||| | |||| | || || |||| ||| || |||| | Sbjct 1111 CATGTGCTGTGGCCTTTCAATAACCTTGCCTTGTACCTTTAACAGGTAAGACCTTTCAAG 1052 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63680 |||||||| ||||| || | || |||||||| Sbjct 1051 CGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTC 1017 >seq33760 Length=8815 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || |||||||| | |||| ||| |||| ||| |||||| | |||||| | ||| ||| Sbjct 3356 CCACCCTGATCCACATATCGAGCTGTGTCATTGAAAACTCGAAGCATTGGGACAATGCCA 3297 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| ||||| || || ||||| ||||| ||||||| ||||| || || Sbjct 3296 TTGGATGTCCCATTCGTTCCACGTATATAACTTCCTGTGGCACGTATATTGTGGATCGAC 3237 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || || || ||| || | || ||| || | |||||||| ||| Sbjct 3236 ACACCAATACCTCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGTGTATCATATATG 3177 Query 63407 CCCTCTATACTATCATCCATCATG 63430 || || ||||| |||||| ||||| Sbjct 3176 CCTTCAATACTGTCATCCTTCATG 3153 >seq42153 Length=9390 Score = 100 bits (110), Expect = 4e-16 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || |||||||||||||| | || || ||||| || ||||| || |||| Sbjct 4842 ACAGCAAGCAAGCGAAATCGCAGTGCAAGCCTTCATCTCTCGAGATCAATTCATTCGAAA 4901 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771 |||| || || ||||| || || ||||| || |||||||| |||| |||| | | | || Sbjct 4902 ACGTCAGCCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAAATGG-CGCAGAAGCTCCCG 4960 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 32805 || ||||| || ||||| || ||| ||||||| Sbjct 4961 GAGAAGAAGATCCCTTCAACGCACGCGAAGGCAA 4994 >seq136600 Length=929 Score = 91.5 bits (100), Expect = 2e-13 Identities = 241/368 (65%), Gaps = 0/368 (0%) Strand=Plus/Minus Query 63326 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385 || || ||||| ||| || | || || || || || |||| ||| ||| ||| Sbjct 920 GCTCGTATATTGTGAATAGACAATCCAATACCACCCGCAGTTTTGCTTATTTCTGCACAT 861 Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445 |||| || || ||||| ||||| || ||||| || |||| || || || || Sbjct 860 TCCTTTAGAGTGTCGTAGATACCCTCAATGCTATCCTCTTTCATACACAGGAGGAAGCAA 801 Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || || || | | || ||||| ||||| || | ||||| || || ||||| ||| Sbjct 800 CTGCTCAACTGAGGTCTACACGTTCCAGCATTGAAAAGAGTAGGCGAGGCATGAGTGAAC 741 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || || || | | || || || || || | ||| |||| || |||||| Sbjct 740 CAGCCTTGGGACATTGTATGATAGGTACGGATGGCAGCGTCAATATTGTCTTTATGAATA 681 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 || || | || | |||||||||||||||||| ||||| || | ||| || || || Sbjct 680 CCAACAGAAACCCTCATTAACATGTGCTGAGGCCTTTCCACTACCTTCCCATTGATCCTC 621 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 | | || || |||||| || || || ||||| || | || |||||||||| || Sbjct 620 AGTAGATAAGACCTTTCCAGGGTCTTGAATCCAAAGTAATCATAGTAAAAGTCTCGGTCA 561 Query 63686 TAAATAAT 63693 ||||| || Sbjct 560 TAAATGAT 553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632120185729600