Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11]
190,876 sequences; 353,287,234 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq181895 96.9 4e-15
seq31771 93.3 5e-14
seq187245 87.8 2e-12
seq24271 87.8 2e-12
seq147869 84.2 2e-11
seq46818 84.2 2e-11
seq307 84.2 2e-11
>seq181895
Length=2048
Score = 96.9 bits (106), Expect = 4e-15
Identities = 73/85 (86%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 1377 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 1436
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
||||||||||||||||| ||||||
Sbjct 1437 GTGGGTTCGAACCCCACTTCTGACA 1461
>seq31771
Length=9075
Score = 93.3 bits (102), Expect = 5e-14
Identities = 78/95 (82%), Gaps = 2/95 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||
Sbjct 3593 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGC 3534
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||| || ||||| |||||| |||| |||
Sbjct 3533 GTGGGTTCAAATCCCACTTCTGACATTTTATAATT 3499
>seq187245
Length=1373
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/85 (84%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||
Sbjct 471 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGC 412
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||| || ||||| ||||||
Sbjct 411 GTGGGTTCAAATCCCACTTCTGACA 387
>seq24271
Length=12525
Score = 87.8 bits (96), Expect = 2e-12
Identities = 79/97 (81%), Gaps = 8/97 (8%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 8198 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 8255
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||||| |||||||| ||||| |||||| ||
Sbjct 8256 GCGTGGGTTCAAACCCCACTTCTGAC--ATTATTTTT 8290
>seq147869
Length=6382
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/88 (82%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 2625 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 2566
Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350
|||||||| |||||||| |||||| ||
Sbjct 2565 GTGGGTTCAAACCCCACTTCTGACATAT 2538
>seq46818
Length=6707
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/88 (82%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 5689 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 5630
Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350
|||||||| |||||||| |||||| ||
Sbjct 5629 GTGGGTTCAAACCCCACTTCTGACATAT 5602
>seq307
Length=11629
Score = 84.2 bits (92), Expect = 2e-11
Identities = 75/93 (81%), Gaps = 2/93 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
||||| |||||||||||||||||||||||||| || | | ||||| || | ||||
Sbjct 9096 AGTCAAGTTGGCCGAGTGGTCTAAGGCGCCAGTTTCAGGTACTGGT--CCGAAAGGGCGT 9153
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||| || ||||||| ||||| ||||||||
Sbjct 9154 GGGTTCAAATCCCACACTTGACATTTTATTATT 9186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555532157974240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |