Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq185098 109 1e-18 seq172882 109 1e-18 seq113753 109 1e-18 seq78466 95.1 2e-14 seq729 93.3 9e-14 seq179501 89.7 1e-12 seq124369 87.8 4e-12 seq46401 87.8 4e-12 seq44016 87.8 4e-12 seq40690 87.8 4e-12 seq38795 87.8 4e-12 seq26035 87.8 4e-12 seq3964 87.8 4e-12 seq33190 86.0 1e-11 seq29021 86.0 1e-11 >seq185098 Length=494 Score = 109 bits (120), Expect = 1e-18 Identities = 183/262 (70%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 218528 ACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGG 218587 ||| |||||| || || || || | |||| || | |||||||| | |||| | Sbjct 93 ACAGGGAGCTGATACTCTTTTCCATGGCTGATTTGCTAAGGTCTATTCCTTCCATGGTCG 152 Query 218588 ATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTT- 218646 |||| || |||||| ||| | ||||| || ||| | | || || || ||| | ||| Sbjct 153 ATGGACTGAAGCCAGGACAGAGAAAGATACTGTTTTGCTCCTTTAAACGCAACTTTGTTA 212 Query 218647 --CAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATC 218704 |||| || |||| || ||||| ||||||||||| || || ||||| || |||| Sbjct 213 CGCAAGCAA---AGGTTGCCCAGTTCTCTGGTTATGTCTCTGAGCATTCTGCATATCATC 269 Query 218705 ACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTA 218764 ||||||| || ||||| | || | ||| | || ||||| ||| | | ||| || || | Sbjct 270 ACGGTGAACAAAGTCTTGTGAGTACTATTATTGGAATGGCTCAGAATTTTGTTGGAAGCA 329 Query 218765 ACAACATGAACTTGCT-GCTCC 218785 ||||||| ||| | || ||||| Sbjct 330 ACAACATTAACCTACTGGCTCC 351 >seq172882 Length=733 Score = 109 bits (120), Expect = 1e-18 Identities = 183/262 (70%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 218528 ACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGG 218587 ||| |||||| || || || || | |||| || | |||||||| | |||| | Sbjct 332 ACAGGGAGCTGATACTCTTTTCCATGGCTGATTTGCTAAGGTCTATTCCTTCCATGGTCG 391 Query 218588 ATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTT- 218646 |||| || |||||| ||| | ||||| || ||| | | || || || ||| | ||| Sbjct 392 ATGGACTGAAGCCAGGACAGAGAAAGATACTGTTTTGCTCCTTTAAACGCAACTTTGTTA 451 Query 218647 --CAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATC 218704 |||| || |||| || ||||| ||||||||||| || || ||||| || |||| Sbjct 452 CGCAAGCAA---AGGTTGCCCAGTTCTCTGGTTATGTCTCTGAGCATTCTGCATATCATC 508 Query 218705 ACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTA 218764 ||||||| || ||||| | || | ||| | || ||||| ||| | | ||| || || | Sbjct 509 ACGGTGAACAAAGTCTTGTGAGTACTATTATTGGAATGGCTCAGAATTTTGTTGGAAGCA 568 Query 218765 ACAACATGAACTTGCT-GCTCC 218785 ||||||| ||| | || ||||| Sbjct 569 ACAACATTAACCTACTGGCTCC 590 >seq113753 Length=445 Score = 109 bits (120), Expect = 1e-18 Identities = 183/262 (70%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 218528 ACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGG 218587 ||| |||||| || || || || | |||| || | |||||||| | |||| | Sbjct 403 ACAGGGAGCTGATACTCTTTTCCATGGCTGATTTGCTAAGGTCTATTCCTTCCATGGTCG 344 Query 218588 ATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTT- 218646 |||| || |||||| ||| | ||||| || ||| | | || || || ||| | ||| Sbjct 343 ATGGACTGAAGCCAGGACAGAGAAAGATACTGTTTTGCTCCTTTAAACGCAACTTTGTTA 284 Query 218647 --CAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATC 218704 |||| || |||| || ||||| ||||||||||| || || ||||| || |||| Sbjct 283 CGCAAGCAA---AGGTTGCCCAGTTCTCTGGTTATGTCTCTGAGCATTCTGCATATCATC 227 Query 218705 ACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTA 218764 ||||||| || ||||| | || | ||| | || ||||| ||| | | ||| || || | Sbjct 226 ACGGTGAACAAAGTCTTGTGAGTACTATTATTGGAATGGCTCAGAATTTTGTTGGAAGCA 167 Query 218765 ACAACATGAACTTGCT-GCTCC 218785 ||||||| ||| | || ||||| Sbjct 166 ACAACATTAACCTACTGGCTCC 145 >seq78466 Length=487 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 218605 CAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCT 218664 ||| | ||||| ||||| | | ||||| || ||| | ||| || |||||| || Sbjct 480 CAGAGAAAGATACTCTTCTGCTCTTTCAAACGCAACTTTGTTTCTCAAGCTAAGGTGGCC 421 Query 218665 CAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAG 218724 ||||||||||||||||| || || ||| | || || |||||||| || ||||| | Sbjct 420 CAGTTTTCTGGTTATGTTTCTGAGCATTCAGCATATCACCACGGTGAACAAAGTCTTGTG 361 Query 218725 GGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCT-GCT 218783 || |||| | || ||||| || ||| ||| || |||||||| || ||||| | ||| Sbjct 360 AGTACCATCATTGGAATGGCGCAAAACTTTGTCGGAAGTAACAATATCAACTTAATGGCT 301 Query 218784 CCCCAACGGTCAGTTTGGT 218802 || | || ||||||||| Sbjct 300 CCAC-TTGGACAGTTTGGT 283 >seq729 Length=7411 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| |||||||||| || ||||||||||||||||| Sbjct 6191 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAACCTTGTGGTCGTGGGTTCGAG 6132 Query 142563 CCCCAC 142568 |||||| Sbjct 6131 CCCCAC 6126 >seq179501 Length=489 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 483 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 424 Query 142562 GCCCCAC 142568 ||||||| Sbjct 423 GCCCCAC 417 >seq124369 Length=692 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 62 Query 142563 CCCCAC 142568 |||||| Sbjct 63 CCCCAC 68 >seq46401 Length=6106 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4830 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4771 Query 142563 CCCCAC 142568 |||||| Sbjct 4770 CCCCAC 4765 >seq44016 Length=5154 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1472 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1413 Query 142563 CCCCAC 142568 |||||| Sbjct 1412 CCCCAC 1407 >seq40690 Length=8476 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5762 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5703 Query 142563 CCCCAC 142568 |||||| Sbjct 5702 CCCCAC 5697 >seq38795 Length=8882 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 2117 ATGGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 2176 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 2177 AGCCCCAC 2184 >seq26035 Length=2556 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 473 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 532 Query 142563 CCCCAC 142568 |||||| Sbjct 533 CCCCAC 538 >seq3964 Length=9556 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3344 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3403 Query 142563 CCCCAC 142568 |||||| Sbjct 3404 CCCCAC 3409 >seq33190 Length=12254 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 6048 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5989 Query 142564 CCCAC 142568 ||||| Sbjct 5988 CCCAC 5984 >seq29021 Length=6237 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 1326 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1385 Query 142564 CCCAC 142568 ||||| Sbjct 1386 CCCAC 1390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1025323123606716