Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq55212 95.1 9e-15 seq119584 86.0 4e-12 seq156471 84.2 2e-11 seq48530 84.2 2e-11 seq1864 84.2 2e-11 seq37023 82.4 5e-11 >seq55212 Length=5247 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || | || || || |||||||| | ||| ||| || Sbjct 3238 ATGCAGATTTTCGTGAAGACTCTTACTGGAAAGACCATTACACTCGAAGTTGAAAGTTCA 3297 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| ||| ||| ||||| || || | ||| ||||| Sbjct 3298 GACACGATTGACAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATTCCTCCGGACCAA 3357 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | ||||||||||| || || ||||||||| | || | || ||||||||| Sbjct 3358 CAGCGCTTGATCTTTGCTGGGAAGCAGCTAGAAGATGGGAGGACGCTAGCTGATTACAAT 3417 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||| || ||||||||| |||| || Sbjct 3418 ATTCAGAAGGAGTCGACTCTTCATCTGGTTTT 3449 >seq119584 Length=3068 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 |||||||| || | ||| |||| ||||| || || |||||||| |||||| | ||| Sbjct 2250 GATAAAGAAGGAATCCCTCCTGACCAGCAGAGGCTGATATTTGCTGGTAAACAATTGGAA 2309 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||| | |||| |||| ||||||||||| || || ||||| |||||||| Sbjct 2310 GATGGCAGAACTTTGGCGGATTACAATATCCAAAAAGAATCAACTCTTCA 2359 >seq156471 Length=3476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || |||||||| || |||| || || Sbjct 2128 ATGCAGATCTTTGTGAAGACCTTGACTGGAAAAACCATAACTCTGGAGGTTGAGAGTTCA 2187 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||| ||| || ||||| || | ||| | || Sbjct 2188 GACACCATCGATAATGTTAAGGCAAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAG 2247 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| || | ||||| ||||| || || || |||||| | |||| | |||||||||||| Sbjct 2248 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAAGATGGCAGAACTCTTGCCGATTACAAT 2307 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 ||||||||||| || || |||||| Sbjct 2308 ATTCAGAAGGAGTCGACCCTTCAT 2331 >seq48530 Length=6115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || ||||| || || ||||| || |||| || | || Sbjct 3512 ATGCAGATCTTTGTGAAGACCTTAACTGGGAAGACCATAACACTGGAGGTTGAGAGCTCA 3453 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||| ||| || || || ||| | ||| | || Sbjct 3452 GACACCATCGATAATGTGAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCGGATCAG 3393 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | |||||||| ||||| || || |||||| | |||| | ||||| |||||| Sbjct 3392 CAAAGATTGATCTTTGCAGGCAAGCAGCTTGAAGATGGCAGAACTCTTGCCGACTACAAT 3333 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGAT 22062 ||||||||||| || || || ||| | || | || | || ||||||| Sbjct 3332 ATTCAGAAGGAGTCGACCCTCCATCTTGTGCTTCGCCTGCGTGGAGGAT 3284 >seq1864 Length=9564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || |||||||| || |||||||| || |||| || || Sbjct 3376 ATGCAGATCTTTGTCAAGACATTAACTGGGAAAACCATAACTCTGGAGGTTGAGAGTTCA 3317 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||| ||| || ||||| || | ||| | | || Sbjct 3316 GACACCATTGATAATGTTAAGGCAAAGATTCAAGACAAAGAAGGGATTCCTCCAGATCAG 3257 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| || | ||||| ||||| || || || |||||| | |||| | ||||| || || Sbjct 3256 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAAGATGGCAGAACTCTTGCCGACTATAAC 3197 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 ||||||||||| || || |||||| Sbjct 3196 ATTCAGAAGGAGTCGACCCTTCAT 3173 >seq37023 Length=9928 Score = 82.4 bits (90), Expect = 5e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| || || |||||||| |||||| | |||||| | |||| |||| |||| Sbjct 228 ACCAGCAGAGGCTGATATTTGCTGGTAAACAATTGGAAGATGGCAGAACTTTGGCGGATT 287 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCA 22036 ||||||| || || ||||| |||||||| Sbjct 288 ACAATATCCAAAAAGAATCAACTCTTCA 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357291693830104