Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq42153 176 8e-39 >seq42153 Length=9390 Score = 176 bits (194), Expect = 8e-39 Identities = 392/565 (69%), Gaps = 24/565 (4%) Strand=Plus/Minus Query 42311 GTACA-AGAAGGCGCAGTTCTCCAAC-TGGACCGCCGAGGAGATTGACCTGGCCA--AGG 42366 ||||| |||||||| || |||| | ||||| || |||||| | ||| ||| | ||| Sbjct 5396 GTACACAGAAGGCGGAGG-CTCCTTCCTGGACGGCGGAGGAGGTCGACTTGGTCGCGAGG 5338 Query 42367 ACACG-GCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 || | ||| |||||||| || | |||| ||| |||||| | | | | || Sbjct 5337 ACCAGCGCCACATGGGAGTCCCTCACCCGCGACGAGAAGCATTTCCTTAGCA-CGTGCTC 5279 Query 42426 GCCTT-CTTCGCCGCCTCTGACGGCATAGTCAATGAGAA--CCTG-GCCACCAGGTTCAT 42481 ||||| |||||||||||| |||||||| ||| ||||| | | ||| | | ||||| Sbjct 5278 GCCTTGCTTCGCCGCCTC-GACGGCATCGTCCTGGAGAATACATCAGCCGGCCGTTTCAT 5220 Query 42482 GAAAGAGGTG-CAGTACTTTGAGGCG-CGCTGCTTCTACGGCTTCCAGATAGCCATAGAG 42539 || |||||| ||| || |||||| ||| ||||||||| |||||||| ||||| ||| Sbjct 5219 GAG-GAGGTGGCAGGTCTC-GAGGCGGCGCGCCTTCTACGGGTTCCAGATCGCCATCGAG 5162 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGG--ATCCCGTCG 42597 ||| | ||||| ||| ||||| | || ||| | || ||||||| | ||| | | Sbjct 5161 AACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCCAAGTGATCG-GAGG 5103 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 || | | | || ||| || || || || || || ||| || ||| ||||||| || Sbjct 5102 AGAAGAGCCGCCTCTTCCGCGCGATCGACACCATCCCTTGCGTCGAGAGGAAGGCGAGCT 5043 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 ||||||| | ||||||||| | | || ||||||| |||||| |||| ||||| Sbjct 5042 GGGCGCTGAGCTGGATCGACGGATCGGAG---ACGTTCGCGGAGAGGTTGGTTGCCTTCG 4986 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG- 42776 | ||| || || ||||||||||| || |||| | |||| || ||||| ||| || Sbjct 4985 CGTGCGTTGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCCATTTTTTGGCTGAAGAAGC 4926 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 ||| || ||||| || || || || ||||| ||| | ||| || || || || || Sbjct 4925 GCGGTCTC-ATGCCTGGGCTGACGTTTTCGAATGAATTGATCTCGAGAGATGAAGGCTTG 4867 Query 42837 CATAGGGACTTTGCCTGCCTCCTGT 42861 || | || || || ||| | |||| Sbjct 4866 CACTGCGATTTCGCTTGCTTGCTGT 4842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942086053885760