Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1108 96.9 3e-15 seq76882 93.3 3e-14 seq38015 89.7 4e-13 seq169900 86.0 5e-12 seq26240 86.0 5e-12 seq103092 82.4 6e-11 >seq1108 Length=4941 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||||| |||||||||||| || || |||||||| ||||||||||| ||| Sbjct 114 CCTCCTCTCAGCCTCAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGGCC 173 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||||| || ||||| |||| | |||||||||| || Sbjct 174 AAGGTACGACCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGA 233 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||| || Sbjct 234 ATGCCCTCCTTGTCCTGAATCTT 256 >seq76882 Length=309 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 33939 CTTCTGAATGTTGTAATCTGCCA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATA 33997 ||||||||||||||| || || | | || ||| | || || | || || |||||||||| Sbjct 309 CTTCTGAATGTTGTAGTCAGCAAGAGTG-CGCCCATCTTCGAGCTGTTTTCCGGCAAATA 251 Query 33998 TCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAAC 34057 | ||||||||||| || || | || |||||||| ||||||| ||| | | Sbjct 250 TAAGGCGCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATTTTTGCCTTGACGTTGT 191 Query 34058 TCACACTATCAGTAGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAA 34117 | | | |||| |||| ||||| || |||||||| ||||| || ||||| |||| Sbjct 190 CAATAGTGTCAGAGCTTTCGACTTCGAGGGTGATTGTTTTCCCGGTGAGGGTTTTGACAA 131 Query 34118 AGATTTGCAT 34127 |||| ||||| Sbjct 130 AGATCTGCAT 121 >seq38015 Length=2403 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/204 (71%), Gaps = 20/204 (10%) Strand=Plus/Plus Query 33935 TCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCA 33993 |||||||||| ||||| ||||| || || || ||| | || |||| ||||| || ||| Sbjct 1979 TCTCCTTCTGGATGTTATAATCAGC-AAGAGTACGCCCATCTTCCAGCTGCTTCCCAGCA 2037 Query 33994 AATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATG 34053 |||||||| | |||||||||| ||| | || |||||||||| | | || |||| Sbjct 2038 AATATCAGCCTCTGCTGATCCGGCGGAATGCCCTCTTTGTCC-TGTATCTTCGCTT---- 2092 Query 34054 GAACTCACACTATCAGTAG-------ATTCGC--ATTCGACCGTTATTGTTTTTCCGGTT 34104 ||||| |||| ||| | || | ||| | || || ||||||||||| Sbjct 2093 ----TCACATTATCGATAGTGTCCGAACTCTCCACTTCCAGAGTGATAGTTTTTCCGGTC 2148 Query 34105 AGTGTTTTCACAAAGATTTGCATT 34128 || || ||||| ||||| |||||| Sbjct 2149 AGCGTCTTCACGAAGATCTGCATT 2172 >seq169900 Length=516 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || ||||||| ||||| || ||| || ||||||||||| || || | | || | Sbjct 214 AGACGGAGCACCAAGTGAAGAGTTGACTCTTTTTGAATGTTGTAGTCAGCAAGAGTGCGG 273 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | | || || | ||||| ||||| || ||||| || || || || || | || || Sbjct 274 C-CATCTTCAAGCTGCTTTCCGGCGAAGATCAGACGTTGTTGGTCAGGGGGGATGCCTTC 332 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| |||||| ||| | | | | | |||| | |||| ||||| || Sbjct 333 TTTGTCTTGAATTTTGGCCTTCACGTTATCAATAGTATCGGAGCTTTCGACTTCGAGGGT 392 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || |||||||||||||| ||||| || ||||||||||| Sbjct 393 GATGGTTTTTCCGGTTAGGGTTTTAACGAAGATTTGCAT 431 >seq26240 Length=11166 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||||| |||||||| ||| || || |||||||| ||||||||||| ||| Sbjct 8522 CCTCCTCTCAGCCTCAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAATCGGCC 8581 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | ||||| || ||||| |||| | |||||||||| || Sbjct 8582 AGGGTACGGCCATCCTCAAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGATCCGGAGGA 8641 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 8642 ATGCCCTCCTTGTCC 8656 >seq103092 Length=1142 Score = 82.4 bits (90), Expect = 6e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || || || || ||||| ||| ||||||||| ||||||||||| Sbjct 827 GAAACCCCCACGAAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATC 886 Query 33957 TGCCAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCA 34015 ||| | ||| | | || ||||| ||||| || ||||| |||| | |||||| ||| Sbjct 887 AGCC-AGGGTCCTTCCATCCTCCAACTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCG 945 Query 34016 CCGGCACGCTCTCTTTGTC 34034 || | || ||||||||| Sbjct 946 GGGGAATGCCCTCTTTGTC 964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396138713242552