Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq156471 107 1e-18 seq55212 100 2e-16 seq21302 98.7 7e-16 seq38014 89.7 4e-13 seq104136 87.8 1e-12 seq48530 87.8 1e-12 seq38015 87.8 1e-12 seq169900 82.4 5e-11 >seq156471 Length=3476 Score = 107 bits (118), Expect = 1e-18 Identities = 169/238 (71%), Gaps = 13/238 (5%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| ||| ||||| || | ||| | || |||||||||||| || |||| Sbjct 2130 CATC-CCACCTCTCAATCGCAGCACAAGATGAAGGGTCGATTCTTTTTGTATGTTGTAAT 2072 Query 39548 CGGCCAAAACGCGTT----CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 | |||| | ||| |||| || | |||||| || ||||||| || | |||||| Sbjct 2071 CCGCCA----GTGTTCTGCCATCCTCGAGTTGTTTGCCTGCAAAAATCAATCTTTGCTGA 2016 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTG 39661 |||| || | ||||| ||||| |||||| || || |||| |||||||| | Sbjct 2015 TCCGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTCACATTGTCG--ACTGTGTCGG 1958 Query 39662 CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || |||||||| || || || ||||| || || || || || |||||||| Sbjct 1957 AGCTCTCAACCTCCAAAGTGATGGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGCAT 1900 >seq55212 Length=5247 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || |||| || | ||| ||| || || ||||| ||||| || Sbjct 3693 GCCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCTGC 3634 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| |||| || | ||||||||| |||| || |||||||||||||||| || Sbjct 3633 CAGGGTGCGACCATCTTCGAGTTGTTTCCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 3574 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || || ||| || | | ||| ||| || | || ||||| Sbjct 3573 AATCCCTTCCTTATCCTGAATCTTTGCCTTCACATTATCTATTGTATCCGAACTCTCCAC 3514 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || |||| ||| || || ||||||||||| Sbjct 3513 CTCCAAAGTGATGGTCTTCCCTGTTAGAGTCTTGACAAAGATCTGCAT 3466 >seq21302 Length=5313 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||||| || | ||| | || ||| |||||||| || ||||| ||| Sbjct 4222 CCACCTCTCAGTCGCAGCACAAGATGAAGGGTCGATTCCTTTTGTATGTTGTAATCCGCC 4163 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | |||||| ||| || | ||||| || |||| || || | ||||||||||| Sbjct 4162 A----GCGTTCTGCCATCTTCAAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGATCCGG 4107 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTT 39666 || | ||||| ||||| |||||| ||| || |||| |||||||| | ||| Sbjct 4106 AGGGATCCCTTCCTTGTCTTGTATTTTCGCCTTAACATTGTCG--ACTGTGTCGGAGCTC 4049 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||||||| || || || || || || || || || || |||||||| Sbjct 4048 TCAACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAAATCTGCAT 3996 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/236 (68%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | ||| ||||| || | ||| | ||| |||||||||||||| |||| Sbjct 3998 CATC-CCACCCCTCAAGCGCAGCACAAGATGGAGGGTGGACTCTTTTTGTATATTGTAAT 3940 Query 39548 CGGCCAAAACGCGT----TCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 | || | |||| |||| || | || ||||| |||| || || | ||||||| Sbjct 3939 CAGCGA----GCGTCCTGCCATCTTCAAGCTGCTTCCCTGCAAAGATCAATCTCTGCTGA 3884 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCG 39663 || | || | ||||| ||||| || ||| |||| | | | ||| |||| | Sbjct 3883 TCTGGAGGGATCCCTTCCTTGTCTTGAATCTTTGCCTTAACATTATCGATTGTATCTGAG 3824 Query 39664 CTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || |||||||| || || || || || || || || || || |||||||| Sbjct 3823 CTCTCGACCTCCAAAGTGATGGTCTTTCCTGTCAATGTCTTCACAAAAATCTGCAT 3768 >seq38014 Length=3548 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | |||| ||| || || || ||||||||||| || Sbjct 755 CCACCACGAAGACGAAGGACAAGGTGCAGAGTCGACTCCTTCTGGATATTATAATCAGCA 814 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| |||| || ||||| |||| || | | ||||||||||| || Sbjct 815 AGAGTACGCCCATCTTCCAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGATCCGGCGGA 874 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| |||||||| || || ||| | | | | ||||| | || ||||| Sbjct 875 ATGCCCTCTTTGTCCTGGATCTTCGCTTTCACATTATCAATCGTGTCCGAACTCTCCACT 934 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || ||||| || || | ||| || |||||||||||||| Sbjct 935 TCCAAAGTGATGGTTTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 981 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| ||||| |||| | ||| ||||||||||| || || ||||| || || || | Sbjct 979 CATC-CCGCCGCGCAGCCTCAGCACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGT 1037 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||||| | | |||| |||| || || || ||||||| | | ||||||||| | Sbjct 1038 CCGCCAAAGTCCTTCCATCTTCCAGCTGCTTGCCTGCAAAAATCAGCCTCTGCTGATCGG 1097 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | ||||| || || || || || | ||| | | | ||||| | ||| Sbjct 1098 GAGGGATTCCTTCCTTATCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCGGAGCTC 1156 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||| ||| || || || || |||| ||||| |||||||| ||||| Sbjct 1157 TCGACTTCCAGAGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 1209 >seq104136 Length=768 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||| ||||| || | || |||| ||||||||||||||| ||| Sbjct 578 TCCTTTTGGATATTGTAATCCGCAAGGGTGCAACCATCCTCCAATTGTTTCCCGGAAAAT 519 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||||||||| || | | | ||||| ||||| || ||| ||| | || Sbjct 518 ATCAGACGCTGCTGGTCAGGACGAATCCCTTCCTTGTCATTAATCTTTGCTTTTACATTC 459 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||| || | |||||| || |||| ||||| || ||||| || | ||||| || Sbjct 458 TCAATTGTATCAGAGCTTTCAACTTCCAGGGTAATGGTCTTACCAGTGAGGGTTTTGACA 399 Query 39709 AAGATCTGCAT 39719 ||||| ||||| Sbjct 398 AAGATTTGCAT 388 >seq48530 Length=6115 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| || | ||| | |||| || || || ||||| ||||| || | || || Sbjct 3750 CGCAGCACAAGATGGAGAGTGGACTCCTTCTGGATATTGTAATCAGCGAGGGTACGGCCA 3809 Query 39565 TCGTCCAATTGTTTCCC-GCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 || || | ||| ||||| || |||||| || | ||||| || | || | |||||| || Sbjct 3810 TCTTCGAGTTGCTTCCCTGCAAAAAATCAATCTTTGCTGGTCTGGTGGAATGCCTTCCTT 3869 Query 39624 GTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTA 39681 || |||||| |||| | ||| || ||||||| |||||| | ||||| ||| Sbjct 3870 ATCCTGGATTTTTGCCTTAACATTGTCAATA--GTGTCTGAGCTTTCG-CTTCCAAGGTA 3926 Query 39682 ATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || | |||||| |||||||||||||| Sbjct 3927 ATCGTCTTTCCGGTAAGAGTTTTCACGAAGATCTGCAT 3964 >seq38015 Length=2403 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| | ||| ||||||||||| || || || || || || || || ||| Sbjct 2173 CCCCCGCGCAGCCTCAGAACCAAATGCAATGTCGACTCCTTCTGAATGTTGTAGTCCGCC 2232 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | |||| |||| ||||| || ||||||| | | ||||||||| | || Sbjct 2233 AATGTCCTTCCATCTTCCAGCTGTTTGCCTGCAAAAATCAGCCTCTGCTGATCGGGAGGG 2292 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||||| || | | | || | || | || |||| | |||||| | ||| || Sbjct 2293 ATTCCTTCTTTATC-CTGAATCTTCGCCTTCACATTGTCG--ATTGTGTCGGAGCTCTCG 2349 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||| ||| || || || || |||| ||||| |||||||| ||||| Sbjct 2350 ACTTCCAGAGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 2399 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || |||||||| || | | || |||| |||| || ||||| |||| Sbjct 1981 TCCTTCTGGATGTTATAATCAGCAAGAGTACGCCCATCTTCCAGCTGCTTCCCAGCAAAT 2040 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCG 39646 || | | ||||||||||| || | ||| |||||||| ||| || ||| || Sbjct 2041 ATCAGCCTCTGCTGATCCGGCGGAATGCCCTCTTTGTCCTGTATCTTCGCTTTCACATTA 2100 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| || ||||| | || ||||| |||| ||| || ||||| || || | || || | Sbjct 2101 TCGATA--GTGTCCGAACTCTCCACTTCCAGAGTGATAGTTTTTCCGGTCAGCGTCTTCA 2158 Query 39707 CGAAGATCTGCAT 39719 ||||||||||||| Sbjct 2159 CGAAGATCTGCAT 2171 >seq169900 Length=516 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 |||||||| || ||||| || || | | || |||| || | ||||| || |||| Sbjct 13 TCTTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAG 72 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646 || | |||||||| || | || | ||||||||||| ||||| || | | | Sbjct 73 ATGAGGCGCTGCTGGTCAGGCGGGATCCCTTCTTTGTCTTGAATTTTGGCCTTCACGTTG 132 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| || ||||| | ||||||||| || | ||| || ||||| || |||| || || | Sbjct 133 TCGATA--GTGTCGGAGCTTTCCACTTCAAGAGTGATGGTTTTTCCAGTTAGGGTCTTGA 190 Query 39707 CGAAGATCTGCAT 39719 |||| |||||||| Sbjct 191 CGAATATCTGCAT 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346561513665308