Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq26386 113 6e-20 seq21692 109 7e-19 seq87019 105 8e-18 seq42153 87.8 2e-12 >seq26386 Length=13841 Score = 113 bits (124), Expect = 6e-20 Identities = 256/380 (67%), Gaps = 9/380 (2%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || ||||| ||||| |||||||| || || | ||||||||| | | Sbjct 1716 AATCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCCA--C 1773 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | ||| ||||| | | ||| | ||||| |||||||||||||||||||| || |||| Sbjct 1774 CTCCCATCCCAGCCCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATGC 1833 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 | ||| |||||| || || || || | ||||| || | | || ||||| || Sbjct 1834 AAGGT--GCTTTCGCCTTCGCCTTCTCGAACAAATCCCTCACTCTCGAAGCTCCCACTCC 1891 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 || |||| |||||| || | | || | |||| || ||| || || | ||| || Sbjct 1892 CACGAACAGCTCCACGAACTCCGAAGCTGCACATGAGAAGAACGGCACCCCGGCTTCTCC 1951 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 || | || | || | || ||||| ||||| || || |||| | | ||| ||| Sbjct 1952 GGCCACCGCCCTAGCCAATAGGGTCTTCCCCGTGCCAGGTGGACCCACCAAAAGGCAACC 2011 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | || ||||| || || | || |||| | || || | || | |||||||| | Sbjct 2012 TTTAGGGATCTTTGCACCCAATGCAGTGTATTTATCTGGGTTTTTCAAGAAATCCACCAC 2071 Query 16331 CTCTTCCAA-TTCATCTTTG 16349 |||| ||| | || ||||| Sbjct 2072 TTCTTGCAACTCCAGCTTTG 2091 >seq21692 Length=6131 Score = 109 bits (120), Expect = 7e-19 Identities = 233/339 (69%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCA 15974 |||||| ||||| | ||||| ||||| || || |||| | ||| |||| | || || Sbjct 2900 ATCAAGAATATCTGCACGATTAGTTGCTGCAATTACAATCACACCAGTGTTACCTT--CA 2957 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| |||||||| |||||||| | || ||||| | || |||||| || Sbjct 2958 AAGCCATCCATTTCTGTCAAGAGCTGGTTGAGTGTCTGTTCTCTCTCGTCATTCCCTCCA 3017 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | ||||| | | ||| || || |||||||| ||||||| || || || ||| Sbjct 3018 CCAATACCAGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCAACAAACACAATACAT 3077 Query 16095 GGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCA 16151 || ||||| || ||| ||| || || || || | ||| || || |||||| Sbjct 3078 GGGGCGTTTTCCTTTGCTTTCTTGAAA-AGGTCGCGGACCC--TTGAAGCTCCAACACCA 3134 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | | ||| || | || ||| || ||| | |||||| Sbjct 3135 ACAAACATCTCAACAAACTCAGAACCTGAA-ATCGAGAAGAAAGGTACACCTGCTTCACC 3193 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || ||| || | ||||| || ||||| || Sbjct 3194 AGCAATAGCCTTGGCTAGCAAGGTCTTCCCTGTACCCGG 3232 >seq87019 Length=1933 Score = 105 bits (116), Expect = 8e-18 Identities = 371/567 (65%), Gaps = 17/567 (3%) Strand=Plus/Minus Query 111897 ATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 111956 ||||| || || |||||| ||| |||| || |||| ||||| | || || || | | Sbjct 1845 ATTAGGGGAACTAATGGTACATCCAATGGCATAGTTCCGATGCTGAGGGTGTTCAATGAC 1786 Query 111957 ACAGCGCGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCTATCTT 112013 ||||| || || ||| | || | ||| | | ||||| || | || | ||| | Sbjct 1785 ACAGCTCGATACGTAGATCAGGGTGGAGGCAAAAGAAAGGGTGCTTTTGCTATTTATTTG 1726 Query 112014 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAG 112073 ||||||||||| || ||||| | || | || || ||| | || || || | || Sbjct 1725 GAGCCATGGCATGCAGATATATTTGATTGGCTAGACTTGAGGAAGAATCATGGAAAGGAA 1666 Query 112074 GAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 112132 || | | | || || ||| | |||| || || ||||| |||||| | ||||||||| | Sbjct 1665 GA-GAACAGAGCTCGAGATTTGTTCTACGGCCTTTGGATCCCAGATTTGTTCATGAAGCG 1607 Query 112133 AGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA 112192 || | |||| ||| ||||||| || ||||| || | |||| || || || | || Sbjct 1606 TGTGCAAGAGAATGGGGATTGGTCCCTGTTTTGCCCTAATGAGGCCCCTGGCCTTGCTGA 1547 Query 112193 -TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GA-AGAAAGTCGG 112247 || | |||||| ||||||| | |||||| || ||| || |||| || Sbjct 1546 CTGTTG-GGGTGAAAAGTTTGAGAAGTTGTACACAGGCTATGAGTCTGAGGGAAAATCTA 1488 Query 112248 GCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGA 112306 | || || || ||| | || | ||||| |||||| | | | || | || Sbjct 1487 G-GAGTG---TTGTTAAAGC-ACAGAAGCTGTGGTTTGCTATTTTGGAAGCCCAGATTGA 1433 Query 112307 GACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAA 112366 || || | || || ||||| ||||| || |||||||| |||||||||||| | || Sbjct 1432 AACAGGCAATCCCTACATGCTCTACAAGGATTCCTGTAACAGAAAGAGTAATCAGCAAAA 1373 Query 112367 TTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGA 112426 | || |||||| ||| || || || ||||| ||| | ||||| ||| ||| Sbjct 1372 CCTTGGAACTATCAAGTCTTCTAATCTATGCACAGAGATCATCGAATTCACAAGTCCAGA 1313 Query 112427 TGAGACGGCTGTGTGTAACCTCGCATC 112453 || || ||||| || || ||||| || Sbjct 1312 GGAAACAGCTGTCTGCAATCTCGCTTC 1286 >seq42153 Length=9390 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || || ||||| ||||| || ||||||||||| || ||||||||| |||| |||||| Sbjct 4992 GCCTTCGCGTGCGTTGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCCATTTTTTGGCTG 4933 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCT 102277 |||||||| ||||||||||| || || Sbjct 4932 AAGAAGCGCGGTCTCATGCCTGGGCT 4907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619261339670720