Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq136600 102 1e-16 seq115059 91.5 2e-13 seq87019 87.8 2e-12 seq16975 84.2 3e-11 seq13760 84.2 3e-11 >seq136600 Length=929 Score = 102 bits (112), Expect = 1e-16 Identities = 228/341 (67%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 110863 GCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC 110922 || || || | ||| ||| || |||||||||||||| || || |||| |||||| Sbjct 920 GCTCGTATATTGTGAATAGACAATCCAATACCACCCGCAGTTTTGCTTATTTCTGCACAT 861 Query 110923 TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAA 110982 || | || || | || ||||| ||||| ||| | || | | || |||||| Sbjct 860 TCCTTTAGAGTGTCGTAGATACCCTCAATGCTATCCTCTTTCATACACAGGAGGAAGCAA 801 Query 110983 GAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAAC 111042 || |||||| | | |||||| |||||||| || ||||| | |||||| ||||| Sbjct 800 CTGCTCAACTGAGGTCTACACGTTCCAGCATTGAAAAGAGTAGGCGAGGCATGAGTGAAC 741 Query 111043 AGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACA---TCTTTACCGTGA 111099 ||||||||||| | | || || || || | | | | |||||| ||| Sbjct 740 CAGCCTTGGGACATTGTATGATAGGTACGGATGGCAGCGTCAATATTGTCTTTA---TGA 684 Query 111100 ATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACA 111159 ||||||| | ||| | ||| ||||| | |||||| |||| | || ||| |||| | Sbjct 683 ATACCAACAGAAACCCTCATTAACATGTGCTGAGGCCTTTCCACTACCTTCCCATTGATC 624 Query 111160 CGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 | | | || ||| | | || |||||||||| |||||||| Sbjct 623 CTCAGTAGATAAGACCTTTCCAGGGTCTTGAATCCAAAGTA 583 >seq115059 Length=565 Score = 91.5 bits (100), Expect = 2e-13 Identities = 222/335 (66%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 109515 CTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATA---CACTTTTGGCTAAT 109571 |||||| ||||| | | | || ||| | |||||||| | || | || || |||| Sbjct 402 CTGATCTATGAAACAAGCGCGGTCAACAGCCATGTCCACAATGTGGCGCTGTT---TAAT 346 Query 109572 TTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAAT 109631 ||||| || || |||| | | ||| | || ||||| | | | |||||||| || Sbjct 345 CTCCCACACCGTTCTGTAAACAGCCTTCAACTCTTCGGGCACTCCTTCAATGTTTTGTAT 286 Query 109632 AGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTT 109691 ||||||| | | | || || || | || || ||| | || | | | | Sbjct 285 AGAGCCATTATGGTAGATAATAGCATTTTTTAATTCAGGCGTCCACAAGCCCATGTCTGT 226 Query 109692 GAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751 |||||||| || ||| ||||||||||| || ||||| |||||| | | || | Sbjct 225 GAGATCGTTAAGAAGGTGCTTGTTGACAACTACAAACTCACCACTTAAAACTCTTCTGCT 166 Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 || ||||| | ||||| ||||| || |||||||||||||| || || || || || Sbjct 165 ATAAATGTTTGATGTGTACGGTTCAAAGCACTCATTGTTGCCAAGAATCTGGCTTGTTGA 106 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||| || ||||| ||||| | || ||| ||||| Sbjct 105 AGCAGTTGGCATTGGAGCAACTAGTAGAGAGTTTC 71 >seq87019 Length=1933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACC 109733 ||| ||||| | || | |||| || | | ||| |||||||| ||||| | ||||||||| Sbjct 619 CCACAGACCCATCTCTGTGAGGTCATTCAAAAGGTGCTTGTTCACCACAATAAATTCACC 678 Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793 | || | ||| ||| || || | || || ||||| || ||||||||||| || Sbjct 679 ACTTAGAACTCTGCGGCTGTATATATTTGATGTATATGGTTCAAAGCACTCATTGTTTCC 738 Query 109794 TAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGA 109839 ||||| || |||||| || || |||||||| || || | |||| Sbjct 739 GAGGATCTGACTAGTGGATGCAGTTGGCATGGGGGCTATCAAAAGA 784 Score = 84.2 bits (92), Expect = 3e-11 Identities = 271/412 (66%), Gaps = 13/412 (3%) Strand=Plus/Plus Query 110521 GTGTACAAGTCCTCAAATTCCTGTCCGTACACA-TCAGAAAGACCCTTCGCCTTGTCGGG 110579 |||||||| | |||||| | | || | ||| |||| ||| || |||| | || Sbjct 1514 GTGTACAACTTCTCAAACTTTTCACCCCA-ACAGTCAGCAAGGCCAGGGGCCTCATTAGG 1572 Query 110580 ACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCA 110639 || || |||||||||| ||| ||| | || | ||||||||||| || || ||||| Sbjct 1573 GCAAAACAGGGACCAATCCCCATTCTCTTGCACACGCTTCATGAACAAATCTGGGATCCA 1632 Query 110640 CATCGCCG-AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCT 110698 | |||| |||| | || || | |||||| | || || || | | | Sbjct 1633 AAG-GCCGTAGAACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCTTCCTCAAGT 1691 Query 110699 CCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTAC 110758 | | | || | ||||| | |||||||| || | ||| | ||| | | ||||| | Sbjct 1692 CTAGCCAATCAAATATATCTGCATGCCATGGCTCCAAATAAATAGCAAAAGCACCCTTTC 1751 Query 110759 GA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAA 110815 | || |||| | || || || |||||| ||||||| ||||| ||||| |||| Sbjct 1752 TTTTGCCTCCACCCTGATCTACGTATCGAGCTGTGTCATTGAACACCCTCAGCATCGGAA 1811 Query 110816 TAATTCCATCGGATTGACCATTTGTACCCCTAATT---CTGGACTTATTGGCACGAATGT 110872 || |||| |||| |||||| || |||||||| ||| | |||| | || || | Sbjct 1812 CTATGCCATTGGATGTACCATTAGTTCCCCTAATGTAGCTGCCC--ATTG-CTCGTATAT 1868 Query 110873 CGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTC 110924 ||| ||| || |||||||||||||| || || |||| |||||| || Sbjct 1869 TGTGAATAGACAATCCAATACCACCCGCAGTTTTGCTTATTTCTGCACATTC 1920 >seq16975 Length=6013 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 1011 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 1066 >seq13760 Length=1412 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 607 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587570732712800