Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq21692 131 2e-25 seq42153 104 3e-17 seq26386 95.1 1e-14 >seq21692 Length=6131 Score = 131 bits (144), Expect = 2e-25 Identities = 249/364 (68%), Gaps = 2/364 (1%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | |||||||| | | || |||||| ||||| | ||||| || || || Sbjct 2870 ATCAAACCTTCCTGGACGTAACAAGGCAGAATCAAGAATATCTGCACGATTAGTTGCTGC 2929 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 || |||| | ||| || | | ||||| |||||||| |||||||| || ||||| | Sbjct 2930 AATTACAATCACACCAGTGTTACCTTCAAAGCCATCCATTTCTGTCAAGAGCTGGTTGAG 2989 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9373 || ||||| | || |||||| || | ||||| | | ||| || || || Sbjct 2990 TGTCTGTTCTCTCTCGTCATTCCCTCCACCAATACCAGTTCCTCTTTGACGCCCAACAGC 3049 Query 9374 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 9433 |||||| ||||||| || ||||||||||| ||||| || | | || || || Sbjct 3050 ATCAATTTCATCAACAAACACAATACATGGGGCGTTTTCCTTTGCTTTCTTGAAAAGGTC 3109 Query 9434 GCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 9493 ||| |||||| || || ||||||||||||||||| ||||| | | | ||| || | Sbjct 3110 GCGGACCCTTGAAGCTCCAACACCAACAAACATCTCAACAAACTCAGAACCTGAA-ATCG 3168 Query 9494 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 9552 || ||| || ||| | |||||| ||||| || ||| || | ||||| || |||| Sbjct 3169 AGAAGAAAGGTACACCTGCTTCACCAGCAATAGCCTTGGCTAGCAAGGTCTTCCCTGTAC 3228 Query 9553 CTGG 9556 | || Sbjct 3229 CCGG 3232 >seq42153 Length=9390 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || ||||||| || || | |||||| || || || || ||||||||||| |||||| Sbjct 4871 CCTTCATCTCTCGAGATCAATTCATTCGAAAACGTCAGCCCAGGCATGAGACCGCGCTTC 4930 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 |||| |||| |||| |||||||| ||||||||||||||| || || || ||||| || Sbjct 4931 TTCAGCCAAAAAATGGCGCAGAAGCTCCCGGAGAAGAAGATCCCTTCAACGCACGCGAAG 4990 Query 117412 GCAAAAAGGCGCTCGGCGAA 117431 |||| | | ||| ||||| Sbjct 4991 GCAACCAACCTCTCCGCGAA 5010 >seq26386 Length=13841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 252/380 (66%), Gaps = 9/380 (2%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || ||||| || || |||||||| || || | ||||||||| | | Sbjct 1716 AATCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCCA--C 1773 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | ||| ||||| | | ||| | ||||| |||||||||||||||||||| ||||| | Sbjct 1774 CTCCCATCCCAGCCCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATGC 1833 Query 9400 ATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 | ||| |||||| || | || || | ||| | || || || ||||| || Sbjct 1834 AAGGT--GCTTTCGCCTTCGCCTTCTCGAACAAATCCCTCACTCTCGAAGCTCCCACTCC 1891 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 || |||| |||||| || | | || | |||| || ||| || || | ||| || Sbjct 1892 CACGAACAGCTCCACGAACTCCGAAGCTGCACATGAGAAGAACGGCACCCCGGCTTCTCC 1951 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || | || | || | || ||||| ||||| || || |||| | | ||| ||| Sbjct 1952 GGCCACCGCCCTAGCCAATAGGGTCTTCCCCGTGCCAGGTGGACCCACCAAAAGGCAACC 2011 Query 9578 CCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAAT 9637 || ||||| || || | || |||| | || || | || | |||||||| | Sbjct 2012 TTTAGGGATCTTTGCACCCAATGCAGTGTATTTATCTGGGTTTTTCAAGAAATCCACCAC 2071 Query 9638 CTCTTCCAA-TTCATCTTTG 9656 |||| ||| | || ||||| Sbjct 2072 TTCTTGCAACTCCAGCTTTG 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588573135310240