Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq452 587 9e-163 seq165807 533 2e-146 seq3541 237 2e-57 seq112378 158 1e-33 seq8266 134 2e-26 >seq452 Length=65819 Score = 587 bits (650), Expect = 9e-163 Identities = 722/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| || || | ||| | ||||| |||| ||||| ||||| || Sbjct 10757 TTCTGCAACTGGATAACCAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 10698 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| |||| || |||||||| || Sbjct 10697 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 10639 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | || |||||||| Sbjct 10638 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 10579 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || |||||||| || |||| |||| || |||||| | ||||| |||||||| Sbjct 10578 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 10519 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||||| | | ||||| |||||||| || ||||||||||| | | | | Sbjct 10518 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 10459 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || ||||||||| | ||||||| | | | | Sbjct 10458 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 10399 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 | |||||| | |||||||| |||||| |||||||| || || | || || || Sbjct 10398 TTTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGCTCCTGTTGCAGCTGCTACCGC 10339 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | |||||| ||||||| || ||| ||||||||||||||||||||||| Sbjct 10338 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 10279 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 |||||| || |||||||||||| | |||||||| || ||||||||||| |||||||| || Sbjct 10278 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 10219 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || |||||| ||| ||||| ||| | ||||| || || |||||| || |||||||| Sbjct 10218 ATTTCATATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 10159 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | ||||| || || || || | |||||| || | || Sbjct 10158 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 10099 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| ||||||||||| |||||||| |||||||| || || || ||||| ||||| || Sbjct 10098 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGG 10039 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| |||||||| ||||| |||||||||||||| | | ||||||||| |||| Sbjct 10038 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 9979 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| || | ||||| || || | |||||| | || ||||| ||||| Sbjct 9978 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAA 9919 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 | | || || || || || |||||||| || || ||| | | || | ||| ||| Sbjct 9918 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATAC 9859 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 |||| ||| | | ||| | || ||||||||||||||||| |||||||| ||||| || Sbjct 9858 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 9799 Query 169450 TCACAACTTCCCACTAGACTTAGC 169473 ||| |||||||| |||||| |||| Sbjct 9798 TCATAACTTCCCTCTAGACCTAGC 9775 >seq165807 Length=4432 Score = 533 bits (590), Expect = 2e-146 Identities = 710/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | ||| | |||||| |||| ||||| ||||| || Sbjct 2956 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 3015 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 ||||| || |||||| || ||| | | ||| || ||| | || || |||||||| || Sbjct 3016 ATGATTCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCCCC 3074 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || || || || || || | |||||||| | || ||||| | ||||||||||| Sbjct 3075 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 3134 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 ||||| || ||||| || |||| |||| || || || | ||||| |||||||| Sbjct 3135 TATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAAT 3194 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 |||||||| || | | ||||| |||||||| || || |||||||| || | | | Sbjct 3195 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGT 3254 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || |||||||| | |||||||| | | | | Sbjct 3255 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCG 3314 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| | |||||||| |||||| |||||||| || || | || || ||| Sbjct 3315 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGC 3374 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | || ||| | ||||| || ||| || ||||| |||||||||||||| Sbjct 3375 TGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAAT 3434 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 ||||| || || ||||| ||| | |||||||| || ||||||||||| |||||||| || Sbjct 3435 CTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 3494 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || || ||| ||| ||||| ||| | ||||| || || |||||| || |||||||| Sbjct 3495 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 3554 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | ||||| || || || || | |||||| || | || Sbjct 3555 TTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 3614 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| || |||||||| |||||||| |||||||| || || || ||||| || || || Sbjct 3615 TTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 3674 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| |||||||| ||||| ||||| |||||||| | | | || |||||| |||| Sbjct 3675 CCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGC 3734 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| || | ||||| || || | ||||| | || ||||| ||||| Sbjct 3735 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 3794 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 | || || || || || |||||||| || || ||| | | ||| | ||| ||| Sbjct 3795 TCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 3854 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| || Sbjct 3855 CTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 3914 Query 169450 TCACAACTTCCCACTAGACTTAGC 169473 ||| || ||||| |||||| |||| Sbjct 3915 TCATAATTTCCCTCTAGACCTAGC 3938 >seq3541 Length=30046 Score = 237 bits (262), Expect = 2e-57 Identities = 267/357 (75%), Gaps = 3/357 (1%) Strand=Plus/Plus Query 168974 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTC 169033 || || |||||||||||| | |||||||| || ||||||||||| |||||||| || || Sbjct 15372 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 15431 Query 169034 CATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCA 169093 |||||| ||| ||||| ||| | ||||| || || |||||| || ||||||||||| Sbjct 15432 CATATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 15491 Query 169094 CTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTAC 169153 | ||||| ||| | | ||||| | || || | |||||| || | |||||| Sbjct 15492 TTGGTAACTTCTAGTTTGATCAGGGGGAAA---GAAAATGAATCTGCTAATGAAGGTTAC 15548 Query 169154 AAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGA 169213 | ||||||||||| ||| |||| |||||||| || || || ||||| ||||| || || Sbjct 15549 AGATTCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGCCGA 15608 Query 169214 TTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTG 169273 || |||||||| ||||| |||||||||||||| | | |||||||||||||| | Sbjct 15609 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCT 15668 Query 169274 TTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330 | || || ||| || | ||||| || || | |||||| | || ||||| |||||| Sbjct 15669 TGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAAC 15725 >seq112378 Length=4714 Score = 158 bits (174), Expect = 1e-33 Identities = 180/241 (75%), Gaps = 7/241 (3%) Strand=Plus/Plus Query 168923 TACCCATTTGGTCAGGGTTCTTTCTC-TGATGGTATGCCTCTAGGAATTTCTGGAACATT 168981 |||||| ||||||| || ||| || ||||||||||||||||||||||||||| || || Sbjct 2503 TACCCAATTGGTCAAGGAAGTTTTTCCTGATGGTATGCCTCTAGGAATTTCTGGTACTTT 2562 Query 168982 CAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGC 169041 |||||||||| | ||||||||||| |||| || |||||| || || |||||| Sbjct 2563 CAACTTCATGATTATATTCCAAGCACAGCA------TCCTATGCACCCATTTCATATGTT 2616 Query 169042 AGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAAC 169101 || ||||| ||| | ||| |||| || |||||| | ||||||||||| | ||||| Sbjct 2617 GGGTGTAGCTGGTGTATTCAGTGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGTAAC 2676 Query 169102 ATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGG 169161 ||| | | ||||| || || || | | |||||| || | |||||||| ||||| Sbjct 2677 TTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAAGGTTACAAATTCGG 2736 Query 169162 T 169162 | Sbjct 2737 T 2737 >seq8266 Length=1953 Score = 134 bits (148), Expect = 2e-26 Identities = 213/303 (70%), Gaps = 22/303 (7%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| || || | ||| | ||||| |||| ||||| ||||| || Sbjct 840 TTCTGCAACTGGATAACCAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGT-TTG 898 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 ||||||| | | ||| || ||| | | ||||| |||| | || |||||||| || Sbjct 899 ATGATCCTAACCT-ATTGACCGCAACTTC-TGTTTTATTG---CCTTCATTGCTGCTCCT 953 Query 168611 CCTGTCGATATCGACGGAAT--------------CAGA--GAACCTGTAGCAGGTGCTCT 168654 || || ||||| || || || | || |||||||| | || |||| Sbjct 954 CCAGTAGATATTGATGGTATTCGTGAAACCGTTTCGGATTGAACCTGTTTCTGGATCTCT 1013 Query 168655 AATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCT 168714 | | || |||||||| || || |||||||| || |||| |||| || |||||| | Sbjct 1014 ACTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTT 1073 Query 168715 ACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCC 168774 ||||| |||||||| ||||||||||| | | ||||| |||||||| || |||||||| Sbjct 1074 GCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCC 1133 Query 168775 TTA 168777 ||| Sbjct 1134 TTA 1136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563094870564480