Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11]
190,876 sequences; 353,287,234 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq452 527 9e-145
seq165807 491 7e-134
seq3541 233 3e-56
seq112378 129 9e-25
seq8266 118 2e-21
>seq452
Length=65819
Score = 527 bits (584), Expect = 9e-145
Identities = 697/967 (72%), Gaps = 0/967 (0%)
Strand=Plus/Minus
Query 215314 TACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGC 215373
||| || || ||| | ||| |||| ||||||||||| | ||||| ||| | | | |
Sbjct 10737 TACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 10678
Query 215374 AGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAAT 215433
|| || || || || | || ||||| ||||| ||||| || ||||| || || ||
Sbjct 10677 CGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 10618
Query 215434 CAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 215493
| || || ||| |||| ||| || | || || ||||| || || || ||||| || |
Sbjct 10617 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCAGGTGCCATTAT 10558
Query 215494 ACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGA 215553
|||| ||| || ||||| || ||||| ||||| ||||||||||||||| | |||||
Sbjct 10557 TCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGA 10498
Query 215554 CGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTAT 215613
|||||| | ||||| ||||| |||| |||| || | | |||||| | ||||| |
Sbjct 10497 TGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 10438
Query 215614 TTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGAT 215673
|| ||| || | ||||||| ||| || | | || |||||| | ||||||||
Sbjct 10437 AGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTTTGGGTATGCGCCCTTGGAT 10378
Query 215674 CTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATT 215733
|||||| || || || ||||| | ||||| || || ||| | | || ||| |
Sbjct 10377 TGCTGTTGCGTATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAAT 10318
Query 215734 CGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACAT 215793
||||| || ||| ||||||| |||||| || ||||| ||||| || ||||||| |||
Sbjct 10317 TGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCAT 10258
Query 215794 GTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGC 215853
| |||| |||||||||||||||||||| || ||||||||||| || ||||||||||| ||
Sbjct 10257 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGC 10198
Query 215854 TGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCT 215913
|||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | |
Sbjct 10197 TGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTT 10138
Query 215914 AATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGA 215973
||||| || || || || | |||||| || | ||||||| ||||| ||||||||
Sbjct 10137 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGA 10078
Query 215974 GGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGC 216033
||||| || || ||||||||||| || ||||||||||| || | ||||||||||| ||
Sbjct 10077 AGAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGCCGATTGATCTTCCAATATGC 10018
Query 216034 ATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTAT 216093
|||||||||||| | | ||||||||| | || || | ||||| | ||||
Sbjct 10017 TAGTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTAT 9958
Query 216094 CTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAA 216153
|||| ||||| | ||| || || ||||| |||||||| || |||||||| |||||
Sbjct 9957 CTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAA 9898
Query 216154 CCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAG 216213
||| ||||| || || || || ||| ||||||||| || | | ||| |
Sbjct 9897 CCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAACCG 9838
Query 216214 AGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTT 216273
|| |||||||||||||| ||||| || ||||| ||||| |||||||| ||||| |
Sbjct 9837 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 9778
Query 216274 GGCTGCT 216280
||||||
Sbjct 9777 AGCTGCT 9771
>seq165807
Length=4432
Score = 491 bits (544), Expect = 7e-134
Identities = 689/967 (71%), Gaps = 0/967 (0%)
Strand=Plus/Plus
Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374
||||| || ||| | || |||| ||||||||||| | ||||||||| | | |
Sbjct 2977 ACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACC 3036
Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434
|| || || || || | || ||||| ||||| ||||| || || || || || ||
Sbjct 3037 GCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATT 3096
Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494
| || || ||| |||| ||| || | ||||| ||||| ||||| |||||||| || |
Sbjct 3097 CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATT 3156
Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554
|||| ||| || || || || ||||| ||||| || |||||||| ||| | |||||
Sbjct 3157 CCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGAT 3216
Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614
|||||| | ||||| || || |||| | || || | | |||||| | ||||| |
Sbjct 3217 GAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 3276
Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674
|| ||| || | ||||||||||| || | | | |||||| | ||||||||
Sbjct 3277 GCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATT 3336
Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734
|||||| || || || ||||| | || || ||| || ||| | | |||||| ||
Sbjct 3337 GCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATC 3396
Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794
||||| || ||| || |||| ||||| || ||||||||||| || || |||| |||
Sbjct 3397 GGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATG 3456
Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854
|||| |||||||||||||||||||| || ||||||||||| ||||||||||| || |||
Sbjct 3457 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCT 3516
Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914
||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | |
Sbjct 3517 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTG 3576
Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974
||||| || || || || | |||||| || | ||||||| || || ||||||||
Sbjct 3577 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAA 3636
Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034
||||| || || |||||||| || || ||||| ||||| || | ||||||||||| ||
Sbjct 3637 GAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 3696
Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094
||| |||||||| | | | || |||||| | || || | ||||| | |||||
Sbjct 3697 AGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATC 3756
Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154
||| ||||| | ||| | |||||||| ||||| || || |||||||| ||||||
Sbjct 3757 TGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAAC 3816
Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214
|| ||||| || || ||| || ||| ||| ||||| || || ||||| |
Sbjct 3817 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGT 3876
Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274
|| |||||||||||||| ||||| || ||||| ||||| || ||||| ||||| |
Sbjct 3877 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTA 3936
Query 216275 GCTGCTG 216281
|||||||
Sbjct 3937 GCTGCTG 3943
>seq3541
Length=30046
Score = 233 bits (258), Expect = 3e-56
Identities = 267/358 (75%), Gaps = 3/358 (1%)
Strand=Plus/Plus
Query 215777 GGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTC 215836
|| || ||||||| |||| |||| |||||||||||||||||||| || |||||||||||
Sbjct 15372 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 15431
Query 215837 CACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCA 215896
|| ||||||||||| |||||||| ||||| || || | ||| ||| ||||| |||||
Sbjct 15432 CATATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 15491
Query 215897 CTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTAC 215956
| || || ||| | | ||||| | || | || | |||||| || | ||||||
Sbjct 15492 TTGGTAACTTCTAGTTTGATCAGGGGGAAA---GAAAATGAATCTGCTAATGAAGGTTAC 15548
Query 215957 AAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGC 216016
| ||||| |||||||| |||| || || ||||||||||| || ||||||||||| ||
Sbjct 15549 AGATTCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGCCGA 15608
Query 216017 CTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCA 216076
| ||||||||||| || |||||||||||| | | ||||||||||| || ||
Sbjct 15609 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCT 15668
Query 216077 TTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACC 216134
| ||||| | |||||||| ||||| | ||| || || ||||| |||||||
Sbjct 15669 TGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAACC 15726
>seq112378
Length=4714
Score = 129 bits (142), Expect = 9e-25
Identities = 174/240 (73%), Gaps = 7/240 (3%)
Strand=Plus/Plus
Query 215726 TATCCATTCGGTCAGGGTTCTTTCTC-TGATGCTATGCCACTTGGAATCTCTGGAACATT 215784
|| ||| | ||||| || ||| || ||||| |||||| || ||||| ||||| || ||
Sbjct 2503 TACCCAATTGGTCAAGGAAGTTTTTCCTGATGGTATGCCTCTAGGAATTTCTGGTACTTT 2562
Query 215785 CAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTT 215844
||||| |||| || | ||||| |||||| ||| || ||||||||||| || |||||
Sbjct 2563 CAACTTCATGATTATATTCCA-----AGCACAGCATCCT-ATGCACCCATTTCATATGTT 2616
Query 215845 AGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTAC 215904
||||| |||||||| ||| |||| || | ||| || ||||| ||||| | || ||
Sbjct 2617 GGGTGTAGCTGGTGTATTCAGTGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGTAAC 2676
Query 215905 ATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGG 215964
||| | | ||||| || || || | | |||||| || | |||||||| |||||
Sbjct 2677 TTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAAGGTTACAAATTCGG 2736
>seq8266
Length=1953
Score = 118 bits (130), Expect = 2e-21
Identities = 216/314 (69%), Gaps = 22/314 (7%)
Strand=Plus/Plus
Query 215314 TACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGC 215373
||| || || ||| | ||| |||| ||||||||||| | ||||| ||| ||| | |
Sbjct 860 TACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTT-TGATGAT-CCTAACCTATTGAC 917
Query 215374 AGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAAT 215433
|| || || |||| || | | ||||| ||||| ||||| || ||||| || || ||
Sbjct 918 CGCAACTTCT-GTTTTATTG---CCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 973
Query 215434 --------------CAGA--GAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCA 215477
| || || || ||| |||| ||| || | || || ||||| || |
Sbjct 974 TCGTGAAACCGTTTCGGATTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTA 1033
Query 215478 TCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGG 215537
| || ||||| || | |||| ||| || ||||| || ||||| ||||| |||||||
Sbjct 1034 TTTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGG 1093
Query 215538 AAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCC 215597
|||||||| | ||||| |||||| | ||||| ||||| |||| |||| || | | |
Sbjct 1094 AAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTAC 1153
Query 215598 ACTTCCTCATTGGT 215611
||||| | |||||
Sbjct 1154 ACTTCTTACTTGGT 1167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743303872556480
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