Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq452 527 9e-145 seq165807 491 7e-134 seq3541 233 3e-56 seq112378 129 9e-25 seq8266 118 2e-21 >seq452 Length=65819 Score = 527 bits (584), Expect = 9e-145 Identities = 697/967 (72%), Gaps = 0/967 (0%) Strand=Plus/Minus Query 215314 TACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGC 215373 ||| || || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 10737 TACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 10678 Query 215374 AGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAAT 215433 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 10677 CGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 10618 Query 215434 CAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 215493 | || || ||| |||| ||| || | || || ||||| || || || ||||| || | Sbjct 10617 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCAGGTGCCATTAT 10558 Query 215494 ACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGA 215553 |||| ||| || ||||| || ||||| ||||| ||||||||||||||| | ||||| Sbjct 10557 TCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGA 10498 Query 215554 CGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTAT 215613 |||||| | ||||| ||||| |||| |||| || | | |||||| | ||||| | Sbjct 10497 TGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 10438 Query 215614 TTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGAT 215673 || ||| || | ||||||| ||| || | | || |||||| | |||||||| Sbjct 10437 AGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTTTGGGTATGCGCCCTTGGAT 10378 Query 215674 CTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATT 215733 |||||| || || || ||||| | ||||| || || ||| | | || ||| | Sbjct 10377 TGCTGTTGCGTATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAAT 10318 Query 215734 CGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACAT 215793 ||||| || ||| ||||||| |||||| || ||||| ||||| || ||||||| ||| Sbjct 10317 TGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCAT 10258 Query 215794 GTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGC 215853 | |||| |||||||||||||||||||| || ||||||||||| || ||||||||||| || Sbjct 10257 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGC 10198 Query 215854 TGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCT 215913 |||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | | Sbjct 10197 TGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTT 10138 Query 215914 AATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGA 215973 ||||| || || || || | |||||| || | ||||||| ||||| |||||||| Sbjct 10137 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGA 10078 Query 215974 GGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGC 216033 ||||| || || ||||||||||| || ||||||||||| || | ||||||||||| || Sbjct 10077 AGAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGCCGATTGATCTTCCAATATGC 10018 Query 216034 ATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTAT 216093 |||||||||||| | | ||||||||| | || || | ||||| | |||| Sbjct 10017 TAGTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTAT 9958 Query 216094 CTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAA 216153 |||| ||||| | ||| || || ||||| |||||||| || |||||||| ||||| Sbjct 9957 CTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAA 9898 Query 216154 CCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAG 216213 ||| ||||| || || || || ||| ||||||||| || | | ||| | Sbjct 9897 CCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAACCG 9838 Query 216214 AGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTT 216273 || |||||||||||||| ||||| || ||||| ||||| |||||||| ||||| | Sbjct 9837 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 9778 Query 216274 GGCTGCT 216280 |||||| Sbjct 9777 AGCTGCT 9771 >seq165807 Length=4432 Score = 491 bits (544), Expect = 7e-134 Identities = 689/967 (71%), Gaps = 0/967 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | || |||| ||||||||||| | ||||||||| | | | Sbjct 2977 ACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACC 3036 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || || || || || || Sbjct 3037 GCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATT 3096 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | ||||| ||||| ||||| |||||||| || | Sbjct 3097 CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATT 3156 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || ||||| ||||| || |||||||| ||| | ||||| Sbjct 3157 CCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGAT 3216 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| || || |||| | || || | | |||||| | ||||| | Sbjct 3217 GAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 3276 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| || | | | |||||| | |||||||| Sbjct 3277 GCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATT 3336 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | || || ||| || ||| | | |||||| || Sbjct 3337 GCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATC 3396 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||| || |||| ||||| || ||||||||||| || || |||| ||| Sbjct 3397 GGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATG 3456 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||| Sbjct 3457 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCT 3516 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | | Sbjct 3517 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTG 3576 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| || | ||||||| || || |||||||| Sbjct 3577 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAA 3636 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || |||||||| || || ||||| ||||| || | ||||||||||| || Sbjct 3637 GAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 3696 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||| |||||||| | | | || |||||| | || || | ||||| | ||||| Sbjct 3697 AGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATC 3756 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| | |||||||| ||||| || || |||||||| |||||| Sbjct 3757 TGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAAC 3816 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || || ||| || ||| ||| ||||| || || ||||| | Sbjct 3817 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGT 3876 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| ||||| || ||||| ||||| || ||||| ||||| | Sbjct 3877 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTA 3936 Query 216275 GCTGCTG 216281 ||||||| Sbjct 3937 GCTGCTG 3943 >seq3541 Length=30046 Score = 233 bits (258), Expect = 3e-56 Identities = 267/358 (75%), Gaps = 3/358 (1%) Strand=Plus/Plus Query 215777 GGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTC 215836 || || ||||||| |||| |||| |||||||||||||||||||| || ||||||||||| Sbjct 15372 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 15431 Query 215837 CACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCA 215896 || ||||||||||| |||||||| ||||| || || | ||| ||| ||||| ||||| Sbjct 15432 CATATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 15491 Query 215897 CTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTAC 215956 | || || ||| | | ||||| | || | || | |||||| || | |||||| Sbjct 15492 TTGGTAACTTCTAGTTTGATCAGGGGGAAA---GAAAATGAATCTGCTAATGAAGGTTAC 15548 Query 215957 AAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGC 216016 | ||||| |||||||| |||| || || ||||||||||| || ||||||||||| || Sbjct 15549 AGATTCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGCCGA 15608 Query 216017 CTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCA 216076 | ||||||||||| || |||||||||||| | | ||||||||||| || || Sbjct 15609 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCT 15668 Query 216077 TTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACC 216134 | ||||| | |||||||| ||||| | ||| || || ||||| ||||||| Sbjct 15669 TGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAACC 15726 >seq112378 Length=4714 Score = 129 bits (142), Expect = 9e-25 Identities = 174/240 (73%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 215726 TATCCATTCGGTCAGGGTTCTTTCTC-TGATGCTATGCCACTTGGAATCTCTGGAACATT 215784 || ||| | ||||| || ||| || ||||| |||||| || ||||| ||||| || || Sbjct 2503 TACCCAATTGGTCAAGGAAGTTTTTCCTGATGGTATGCCTCTAGGAATTTCTGGTACTTT 2562 Query 215785 CAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTT 215844 ||||| |||| || | ||||| |||||| ||| || ||||||||||| || ||||| Sbjct 2563 CAACTTCATGATTATATTCCA-----AGCACAGCATCCT-ATGCACCCATTTCATATGTT 2616 Query 215845 AGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTAC 215904 ||||| |||||||| ||| |||| || | ||| || ||||| ||||| | || || Sbjct 2617 GGGTGTAGCTGGTGTATTCAGTGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGTAAC 2676 Query 215905 ATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGG 215964 ||| | | ||||| || || || | | |||||| || | |||||||| ||||| Sbjct 2677 TTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAAGGTTACAAATTCGG 2736 >seq8266 Length=1953 Score = 118 bits (130), Expect = 2e-21 Identities = 216/314 (69%), Gaps = 22/314 (7%) Strand=Plus/Plus Query 215314 TACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGC 215373 ||| || || ||| | ||| |||| ||||||||||| | ||||| ||| ||| | | Sbjct 860 TACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTT-TGATGAT-CCTAACCTATTGAC 917 Query 215374 AGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAAT 215433 || || || |||| || | | ||||| ||||| ||||| || ||||| || || || Sbjct 918 CGCAACTTCT-GTTTTATTG---CCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 973 Query 215434 --------------CAGA--GAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCA 215477 | || || || ||| |||| ||| || | || || ||||| || | Sbjct 974 TCGTGAAACCGTTTCGGATTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTA 1033 Query 215478 TCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGG 215537 | || ||||| || | |||| ||| || ||||| || ||||| ||||| ||||||| Sbjct 1034 TTTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGG 1093 Query 215538 AAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCC 215597 |||||||| | ||||| |||||| | ||||| ||||| |||| |||| || | | | Sbjct 1094 AAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTAC 1153 Query 215598 ACTTCCTCATTGGT 215611 ||||| | ||||| Sbjct 1154 ACTTCTTACTTGGT 1167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743303872556480