Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq165807 639 2e-178 seq452 630 8e-176 seq3541 255 7e-63 seq8266 140 4e-28 seq112378 132 5e-26 >seq165807 Length=4432 Score = 639 bits (708), Expect = 2e-178 Identities = 727/973 (75%), Gaps = 2/973 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 3926 GGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 3867 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | ||||| ||| ||||| || | | || ||||| || Sbjct 3866 ATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 3807 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| ||||| || ||||| ||||||| ||| | ||||| ||||| || || || Sbjct 3806 AAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACCAGATACCTACT 3747 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| || || | ||||||| ||||| || |||||| ||| Sbjct 3746 ACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGG 3687 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || || |||||||||||||| || |||||| Sbjct 3686 AAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGA 3627 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || ||||||| | || || |||||||||| ||||| | ||| | | ||| Sbjct 3626 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 3567 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 3566 GTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCT 3507 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || |||||||| |||| ||| |||| Sbjct 3506 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTA 3447 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| ||||| || ||| ||||| |||| ||||| Sbjct 3446 AAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTCCTTGACCGATTGGATAA 3387 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| ||||| ||||| ||||| || || |||||| ||||| ||| Sbjct 3386 ATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 3327 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||| ||||||||| | | |||||| Sbjct 3326 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATGTAACAAGCTACACCAAGT 3267 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| || || || |||| |||||| || | | Sbjct 3266 AAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGAT 3207 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || || || | || ||||| ||| | |||| | |||| Sbjct 3206 GCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGTAGGAATAATGGCA 3147 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 ||||||||||| |||||||| || | ||||| |||| || || ||||| ||||| ||| Sbjct 3146 CCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 3087 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 || || ||||| || ||| ||| ||| || || || || ||||| ||| || | | || Sbjct 3086 ATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAA 3028 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 ||| |||||||| | | |||||||| |||| ||| | |||||| | |||| ||| | Sbjct 3027 AGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTTCAGTGCTGGTTAT 2968 Query 84944 CCAATCACAGAAG 84956 ||||| ||||||| Sbjct 2967 CCAATTACAGAAG 2955 >seq452 Length=65819 Score = 630 bits (698), Expect = 8e-176 Identities = 725/973 (75%), Gaps = 2/973 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| || | Sbjct 9787 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATG 9846 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | | || ||||| || Sbjct 9847 ATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGATTGGTTGAAATTG 9906 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||||||||| | ||| | ||||| ||||| || || || Sbjct 9907 AAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 9966 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| ||||| | |||||| |||||||| |||||| ||| Sbjct 9967 ACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCATATTGG 10026 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || ||||| || |||||||| || |||||||||||||| || |||||| Sbjct 10027 AAGATCAATCGGCCAAAGTAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 10086 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | | |||| Sbjct 10087 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 10146 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 10147 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCT 10206 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||| ||||| || |||||||||||||| || || |||||||| |||| |||| ||||| Sbjct 10207 AACATATGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 10266 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || || || || ||||| |||||||| ||| ||||| || | || || Sbjct 10267 AAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAG 10326 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||| | || |||||||| ||||| || || |||||| ||||| || Sbjct 10327 ATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATACGCAACAGCAATCCAAGGG 10386 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| | ||| | ||| ||||| ||||||||||||||| | | |||||| Sbjct 10387 CGCATACCCAAACGGAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTACACCAAGT 10446 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| |||| |||||| ||||| || |||| |||||| || | | Sbjct 10447 AAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCATTCATCAACGGAT 10506 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 ||||||||||| || || || || || | ||| ||||| ||| | |||| | |||| Sbjct 10507 GCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCTGCAGAAGTAGGAATAATGGCA 10566 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || ||||| || ||||||||||| | ||||| |||| || || ||||| ||||| ||| Sbjct 10567 CCTGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 10626 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| ||| ||| ||||| || || ||||| ||| || | | || Sbjct 10627 ATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA-AGTTGCGGTCAATAA 10685 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | |||||||| |||| || | |||||| | || ||| | Sbjct 10686 GGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTACTGGTTAT 10745 Query 84944 CCAATCACAGAAG 84956 ||| | |||||| Sbjct 10746 CCAGTTGCAGAAG 10758 >seq3541 Length=30046 Score = 255 bits (282), Expect = 7e-63 Identities = 271/357 (76%), Gaps = 3/357 (1%) Strand=Plus/Minus Query 84117 TTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCA 84176 || || ||||||||||| | ||| | ||||| ||||| || || || || ||||||||| Sbjct 15724 TTGAAAGCCATGGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCA 15665 Query 84177 GCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGA 84236 || | ||| ||||| | |||||| |||||||| |||||| |||||||| | || Sbjct 15664 GCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGG 15605 Query 84237 CCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAA 84296 || ||||| || |||||||| || ||||||||||||| || ||||||||||| ||||| Sbjct 15604 CCAAAGTAACCATGAGCAGCTACGATATTATAAGTTTATTCCTCTTGACCGAATCTGTAA 15545 Query 84297 CCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAA 84356 || | || || |||||||| | | | ||| | | |||||| || | ||| Sbjct 15544 CCTTCATTAGCAGATTCATTTTCT---TTCCCCCTGATCAAACTAGAAGTTACCAAGGAA 15488 Query 84357 CCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAG 84416 |||||||| ||| |||||| | || |||||||||||||| || || ||||| ||||| Sbjct 15487 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATATGAAAT 15428 Query 84417 GGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCT 84473 || |||||||||||||| || || |||||||| |||| |||| ||||||| || ||| Sbjct 15427 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCT 15371 >seq8266 Length=1953 Score = 140 bits (154), Expect = 4e-28 Identities = 245/354 (69%), Gaps = 22/354 (6%) Strand=Plus/Minus Query 84620 ACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACC 84679 |||||||||| | | |||||| | |||||| | |||| |||| |||||| ||||| Sbjct 1185 ACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACC 1126 Query 84680 ATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAAT 84739 || |||| |||||| || | |||||||||||| || || || || || | ||| || Sbjct 1125 GTTGTATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGAT 1066 Query 84740 AGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACC 84799 ||| ||| | |||| | |||||| ||||| || ||||||||||| | ||||| || Sbjct 1065 AGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGTAGAGATCC 1006 Query 84800 AG--------------CG--ACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCAC 84843 || || || | ||||| ||||| |||||||| ||||| || ||| Sbjct 1005 AGAAACAGGTTCAATCCGAAACGGTTTCACGAATACCATCAATATCTACTGGAGGAGCAG 946 Query 84844 CAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTC 84903 ||| ||| ||| || ||||||| ||| || | | ||| ||| | ||||| | | | Sbjct 945 CAATGAAGGCA---ATAAAACAGA-AGTTGCGGTCAATAG-GTTAGGATCATCA-AACAC 892 Query 84904 CAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAGT 84957 ||||||| |||| || | |||||| | || ||| | ||| | ||||||| Sbjct 891 CAAACCATCCAATGTAAAGACGGTTTTCGGTACTGGTTATCCAGTTGCAGAAGT 838 >seq112378 Length=4714 Score = 132 bits (146), Expect = 5e-26 Identities = 163/220 (74%), Gaps = 7/220 (3%) Strand=Plus/Minus Query 84284 ACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGA 84343 |||||| |||||||| | || || |||||| ||| ||||| | ||| | | ||| Sbjct 2737 ACCGAATTTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTCCCTGATCAAACTAGA 2678 Query 84344 AGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCC 84403 ||| || | ||||||||||| || |||||| | |||| |||||||||||| || || Sbjct 2677 AGTTACCAAGGAACCATGCATAACACTGAATAGGGAGCCACTGAATACACCAGCTACACC 2618 Query 84404 CAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTT 84463 |||||| ||||| || ||||| |||||| | | || ||||| | || |||| |||| Sbjct 2617 CAACATATGAAATGGGTGCAT-AGGATGCTGT-----GCTTGGAATATAATCATGAAGTT 2564 Query 84464 GAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAA 84503 ||| || || || || || || ||||| ||||||| |||| Sbjct 2563 GAAAGTACCAGAAATTCCTAGAGGCATACCATCAG-GAAA 2525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569910569754080