Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq87019 170 2e-37 seq33760 102 9e-17 >seq87019 Length=1933 Score = 170 bits (188), Expect = 2e-37 Identities = 414/621 (67%), Gaps = 8/621 (1%) Strand=Plus/Plus Query 47886 GATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACAT 47945 || || ||||| || |||||| || | |||| | || ||| || || || | ||| Sbjct 1286 GAAGCGAGATTGCAGACAGCTGTTTCCTCTGGACTTGTGAATTCGATGATCTCTGTGCAT 1345 Query 47946 AGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCC 48005 |||||| | | |||||||| || | ||||| |||||| | ||||||| | ||| Sbjct 1346 AGATTAGAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTTCTGTTACAGGAATCC 1405 Query 48006 TTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACA 48065 ||||| ||||| | || | || ||||| ||||| | ||| | |||| ||| | Sbjct 1406 TTGTAGAGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAAATAGCAAACCACAGC 1465 Query 48066 GTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTC 48125 || || || | |||| |||| ||| ||| || || || || |||||| Sbjct 1466 TTCTGTGCTTTAACAACACTCCTAGATTTTCCCTCAGACTCATAGCCTGTGTACAACTTC 1525 Query 48126 TCAAA---TTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAAT 48182 ||||| |||| ||||| ||| | | | | ||||| |||||||| || | || Sbjct 1526 TCAAACTTTTCA-CCCCA-ACAG-TCAGCAAGGCCAGGGGCCTCATTAGGGCAAAACAGG 1582 Query 48183 GACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA 48242 ||||||||| ||| | || || | |||| || | |||||| |||||||| || || Sbjct 1583 GACCAATCCCCATTCTCTTGCACACGCTTCATGAACAAATCTGGGATCCAAAG-GCCGTA 1641 Query 48243 -AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTC 48301 || ||||| | || ||| ||||| || ||| |||| | | | || || | || Sbjct 1642 GAACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCTTCCTCAAGTCTAGCCAATC 1701 Query 48302 CATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACC 48361 | |||||| ||||||||||| || ||||| || || | |||| || ||| || Sbjct 1702 AAATATATCTGCATGCCATGGCTCCAAATAAATAGCAAAAGCACCCTTTCTTTTGCCTCC 1761 Query 48362 TCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATT 48421 || ||||||| |||| || || | || | || || | ||| || || || ||||| Sbjct 1762 ACCCTGATCTACGTATCGAGCTGTGTCATTGAACACCCTCAGCATCGGAACTATGCCATT 1821 Query 48422 TGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAAT 48481 ||| ||||||| |||||| ||| || || || | |||| |||||| ||| || | Sbjct 1822 GGATGTACCATTAGTTCCCCTAATGTAGCTGCCCATTGCTCGTATATTGTGAATAGACAA 1881 Query 48482 ACCTATACCACCTGCCATTTT 48502 || |||||||| || |||| Sbjct 1882 TCCAATACCACCCGCAGTTTT 1902 >seq33760 Length=8815 Score = 102 bits (112), Expect = 9e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| || ||||| | ||||| || || | || |||||| | |||||||||||| || Sbjct 3357 ACCACCCTGATCCACATATCGAGCTGTGTCATTGAAAACTCGAAGCATTGGGACAATGCC 3298 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| ||||| ||||||||||| | || | |||||| || || Sbjct 3297 ATTGGATGTCCCATTCGTTCCACGTATATAACTTCCTGTGGCACGTATATTGTGGATCGA 3238 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| ||||| || || ||| || | |||||| ||||| |||||||| || Sbjct 3237 CACACCAATACCTCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGTGTATCATATAT 3178 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 ||||| ||||| ||||| |||| Sbjct 3177 GCCTTCAATACTGTCATCCTTCAT 3154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560767636508640