Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq165807 571 2e-158 seq452 554 1e-153 seq3541 192 2e-44 seq8266 132 1e-26 seq112378 104 7e-18 seq101245 84.2 7e-12 >seq165807 Length=4432 Score = 571 bits (632), Expect = 2e-158 Identities = 724/991 (73%), Gaps = 6/991 (1%) Strand=Plus/Minus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 |||| ||||| || || ||||| || |||||||| ||||| ||||| ||||||||||||| Sbjct 3943 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 3884 Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGA 5309 |||| |||||||| | | ||| ||||| || || | | ||| | ||||| | Sbjct 3883 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 3824 Query 5310 CTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 5369 | || || ||||| || || || || ||||| |||||||||||| || || | || | Sbjct 3823 CAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAG 3764 Query 5370 TAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGT 5429 | | ||| || | || || ||||||| ||| | ||||||||||||| ||| |||| Sbjct 3763 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGT 3704 Query 5430 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 5489 |||| |||||||| |||||||| | || ||||| || |||||||| || || || |||| Sbjct 3703 TAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 3644 Query 5490 ACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTT 5549 | |||||||||||||| || ||| | || || | || ||| | | || |||| Sbjct 3643 AAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 3584 Query 5550 CACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGA 5609 | | || | ||| || || | | |||||||||||| ||| | | || |||| Sbjct 3583 CCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 3524 Query 5610 ATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGA 5669 |||| ||||| || || | |||||| || || ||||||||||| ||||| || ||||||| Sbjct 3523 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 3464 Query 5670 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTC 5729 |||| | |||||||||||||||||||||||| || |||||||| ||||| ||||||| Sbjct 3463 ATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTC 3404 Query 5730 CCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATAT 5788 | || |||| || || | || || || | ||||| | || ||||| || ||||||||| Sbjct 3403 CTTGACCGATTGGATAAATCAAGAAAACAGCAGTAGCC-GCCGCAACAGGAGCTGAATAT 3345 Query 5789 GCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAG 5848 || || |||||| || ||||| || | | | ||||||||||||| | || |||| | Sbjct 3344 GCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATG 3285 Query 5849 TAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAA 5908 ||| || | ||||| | |||||| | || | || | || || || || ||||| Sbjct 3284 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTAT 3225 Query 5909 AGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGT 5966 | ||||||||| | ||| || |||||||| || || || ||||| ||||| || || Sbjct 3224 AACCATTCATCAACGGAT--GCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCG 3167 Query 5967 TGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGA 6026 || | || | || ||| || || ||||| ||||||||||| ||||||||||| | | Sbjct 3166 CAGAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAA 3107 Query 6027 CGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATG 6086 | |||||||| || || || ||||| ||||| || ||||| | ||| || | |||||| Sbjct 3106 CAGGTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATA 3047 Query 6087 CAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGC 6146 ||| ||||||||| || | | || ||||| || ||||||||||| || | ||| || | Sbjct 3046 CAGAAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGAC 2987 Query 6147 GGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||| | ||||| || | ||| | |||||| Sbjct 2986 GGTTTTCAGTGCTGGTTATCCAATTACAGAA 2956 >seq452 Length=65819 Score = 554 bits (614), Expect = 1e-153 Identities = 721/992 (73%), Gaps = 10/992 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 9771 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 9830 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGC-TAGAGT--CAAC 5307 ||| |||||||| | || ||| |||||||| || || || || | || | |||| Sbjct 9831 GTTAGCACGGTTGATGATATCAGCCCAAGTATTAA---TTACACGGCCTTGACTATCAAC 9887 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || || || || || || |||||||| ||| ||| || | || Sbjct 9888 TACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGC 9947 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | ||| || | || || ||||||| ||| | |||||| ||||| ||| || Sbjct 9948 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTT 10007 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 ||| || |||||||| |||||||| | || |||||||| |||||||| || || || || Sbjct 10008 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAACCATGAGCAGCTACGATATT 10067 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547 ||| |||||||||||||| |||||| | || || | || ||| | | || || Sbjct 10068 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGT 10127 Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607 ||| | || | |||||| || | |||||||||||| ||| | | || || Sbjct 10128 TTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 10187 Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667 |||||| ||||| ||||| | ||| || || || ||||||||||| ||||| || ||||| Sbjct 10188 GAATACACCAGCTACACCTAACATATGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 10247 Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727 |||||| | ||| ||||| ||||||||||| || || ||||||||||||||| ||||| Sbjct 10248 GAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACT 10307 Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATA 5787 ||| || || | ||||| | || || || | | || || ||||| || |||||||| Sbjct 10308 TCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 10367 Query 5788 TGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAA 5847 || || |||||| || ||||| || || | | ||||||| ||||| | || |||| Sbjct 10368 CGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGCTCCCACTCACGACCCAT 10427 Query 5848 GTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTA 5907 |||| || | ||||| | |||||| | || | |||| || || || || ||||| Sbjct 10428 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTA 10487 Query 5908 AAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCG 5965 | ||||||||| | ||| |||||||||||||| || || ||||| || || || || Sbjct 10488 TAACCATTCATCAACGGAT--GCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCT 10545 Query 5966 TTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCG 6025 || | || | || ||| ||||| || || |||||||| || ||||||||||| | Sbjct 10546 GCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 10605 Query 6026 ACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAAT 6085 || |||||||| || || || || || ||||| || ||||| | ||| || | |||||| Sbjct 10606 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAAT 10665 Query 6086 GCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGG 6145 ||| ||||||||| || | | || ||||| || ||||||||||| || | || || Sbjct 10666 ACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGA 10725 Query 6146 CGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||||| | ||| || || | ||||| ||||| Sbjct 10726 CGGTTTTCGGTACTGGTTATCCAGTTGCAGAA 10757 >seq3541 Length=30046 Score = 192 bits (212), Expect = 2e-44 Identities = 260/359 (72%), Gaps = 9/359 (3%) Strand=Plus/Minus Query 5339 TTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTA 5398 || |||||||| ||| ||| || | || || | ||| || | || || ||||||| | Sbjct 15724 TTGAAAGCCATGGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCA 15665 Query 5399 GCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTC 5458 || |||||||| ||||| ||| ||||| || |||||||| |||||||| | || Sbjct 15664 GCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGG 15605 Query 5459 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATAT 5518 |||||||| |||||||| || || || ||||| |||| ||||||||| |||||| | || Sbjct 15604 CCAAAGTAACCATGAGCAGCTACGATATTATAAGTTTATTCCTCTTGACCGAATCTGTAA 15545 Query 5519 CCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAA---GAAGTAACAAGA 5575 || | || || || | | || |||| | ||| | || ||||| || | Sbjct 15544 CCTTCATT---AGCAG--ATTCATTTTCTTTCCCCC-TGATCAAACTAGAAGTTACCAAG 15491 Query 5576 CTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGG 5635 |||||||||||| ||| | | || |||||||| ||||| ||||| | ||| || Sbjct 15490 GAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATATGA 15431 Query 5636 AACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACC 5694 || || ||||||||||| ||||| || ||||||||||| | ||| ||||| |||||||| Sbjct 15430 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACC 15372 >seq8266 Length=1953 Score = 132 bits (146), Expect = 1e-26 Identities = 244/353 (69%), Gaps = 26/353 (7%) Strand=Plus/Minus Query 5843 CCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCA 5902 |||| |||| || | ||||| | |||||| | || | |||| || || || || Sbjct 1184 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCG 1125 Query 5903 TTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAA 5960 ||||| | ||||||||| | ||| |||||||||||||| || || ||||| || || | Sbjct 1124 TTGTATAACCATTCATCAACGGAT--GCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGA 1067 Query 5961 TTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATC 6020 | || || | || | || ||| ||||| || || |||||||| || |||||||||| Sbjct 1066 TAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGTAGAGATC 1007 Query 6021 C--------------TGCG--ACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCA 6064 | | || |||| |||||| || || || || || ||||| || ||| Sbjct 1006 CAGAAACAGGTTCAATCCGAAACGGTTTCACGAATACCATCAATATCTACTGGAGGAGCA 947 Query 6065 GCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACA 6124 || | ||| || |||| || ||| ||||||||| || || | | ||||| || ||| Sbjct 946 GCAATGAAGGC-AATAAAA---CAGAAGTTGCGGTCAATAG-GTTAGGATCATCAA-ACA 893 Query 6125 CCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||||||| || | || || ||||| | ||| || || | ||||| ||||| Sbjct 892 CCAAACCATCCAATGTAAAGACGGTTTTCGGTACTGGTTATCCAGTTGCAGAA 840 >seq112378 Length=4714 Score = 104 bits (114), Expect = 7e-18 Identities = 130/176 (74%), Gaps = 7/176 (4%) Strand=Plus/Minus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 ||||||||| || ||| | | |||| |||||| ||||| ||||| | ||| || || Sbjct 2664 CCATGCATAACACTGAATAGGGAGCCACTGAATACACCAGCTACACCCAACATATGAAAT 2605 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 || |||||| |||| |||| | ||||||| | ||| ||||| ||||||||||| Sbjct 2604 GGGTGCATA-GGATGCTGTGCT-----TGGAATATAATCATGAAGTTGAAAGTACCAGAA 2551 Query 5699 ATACCAAGAGGCATACCATCA-CTGAAACTTCCCTGTCCGAAAGGGTATACTAAAA 5753 || || ||||||||||||||| |||||||| || || | ||||| | |||| Sbjct 2550 ATTCCTAGAGGCATACCATCAGGAAAAACTTCCTTGACCAATTGGGTAGATCAAAA 2495 >seq101245 Length=1004 Score = 84.2 bits (92), Expect = 7e-12 Identities = 75/94 (80%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||| Sbjct 694 AGCAGCTAGGTCTAGAGGGAAGTTCTGAGCATTACGTTCATGCATAACTTCCATACCAAA 635 Query 5251 GT----TGGCACGGTTCAGGACATCTGCCCAAGT 5280 || | |||||| | | || ||| |||||||| Sbjct 634 GTTAGCTCGCACGGCTAATGATATCAGCCCAAGT 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152303596402536