Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq452 628 3e-175 seq165807 565 3e-156 seq3541 255 6e-63 seq112378 138 1e-27 seq8266 116 4e-21 seq101245 91.5 2e-13 >seq452 Length=65819 Score = 628 bits (696), Expect = 3e-175 Identities = 709/948 (75%), Gaps = 6/948 (1%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || ||| Sbjct 10715 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATT 10656 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 10655 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 10596 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || || || ||||| || || || ||||| | |||||| ||| ||||| ||| Sbjct 10595 CTACTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGT 10536 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| || || ||||||||||||||| | ||||||| ||||| || || ||||| Sbjct 10535 TTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGT 10476 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| |||| | || | |||||| | | || | | ||| |||||| || Sbjct 10475 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 10416 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||| ||| || ||| || |||||||| |||||||| |||||| || || || || Sbjct 10415 TGGGAGCTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGCTCCT 10356 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | || || |||||| |||||| |||| || | |||||||| ||| ||||| Sbjct 10355 GTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 10296 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||||| || |||||||||||||| |||| |||| | || ||||| || |||||| Sbjct 10295 GGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 10236 Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 |||||||| |||||||| || |||||| | || || || ||||||||||| || || || Sbjct 10235 AACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 10176 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 || ||||||||||| ||||| | || |||||| | | ||||| ||||| || || | Sbjct 10175 TTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 10116 Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200 || || || | ||||| | ||||| ||||| ||||| ||||| || || || ||| Sbjct 10115 GAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCT 10056 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCA 163260 |||||||| |||||||| || ||||||||||| ||||| |||||||||||| |||||| Sbjct 10055 GCTCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCA 9996 Query 163261 CTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTG 163320 | ||||||||| | ||||| | ||||| || | |||||||||||||| | ||| | Sbjct 9995 TTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATC 9936 Query 163321 TCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCA 163377 || ||||| |||||||| || |||||||| ||||||||||| || ||||| | Sbjct 9935 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 9876 Query 163378 GGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAA 163437 || || || ||| ||||||||| |||||| | ||| | || |||||||||||| Sbjct 9875 GGCCGT---GTAATTAATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAA 9819 Query 163438 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 9818 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 9771 >seq165807 Length=4432 Score = 565 bits (626), Expect = 3e-156 Identities = 707/968 (73%), Gaps = 6/968 (1%) Strand=Plus/Plus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| || || | ||| | || ||||| ||||| |||||||| ||| || | | || Sbjct 2979 TGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGC 3038 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 | | || || || || || |||||||| || |||||||| || || |||||||| | Sbjct 3039 AACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCG 3098 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 ||||||||| | || || || || ||||| ||||| ||||| |||||||| | |||| Sbjct 3099 TGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCC 3158 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 || ||| ||||| || | ||||| || || || |||||||| ||| | ||||||| Sbjct 3159 TACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGA 3218 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 ||||| || || || || |||| | || | || | |||||| | | || | | Sbjct 3219 ATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGC 3278 Query 162822 AGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTG 162881 ||| || ||| ||||||||||| || ||| | ||||||||||||||||| Sbjct 3279 TTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGC 3338 Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941 ||||||||| || || || || | || || ||||| |||||| | ||||| |||| Sbjct 3339 TGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGG 3398 Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001 |||||| ||| || || | |||||||| || || |||||||||||||||| ||| | Sbjct 3399 TCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGAT 3458 Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061 || ||||| || |||||||||||||| |||||||| || || ||| | || || || || Sbjct 3459 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGG 3518 Query 163062 TGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTAT 163121 ||||||||| || || || || ||||||||||| |||||| | || || ||| | | || Sbjct 3519 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGAT 3578 Query 163122 CAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGA 163181 ||| ||||| || || | || || || | ||||| | || || ||||| ||||| Sbjct 3579 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGA 3638 Query 163182 GACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATC 163241 ||||| || || || || |||||||| || ||||| || ||||||||||| ||||| Sbjct 3639 AACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 3698 Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301 ||| |||||||| ||||| | || |||||| | ||||| | ||||| || | ||||| Sbjct 3699 TTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTG 3758 Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361 ||||||||| | ||| | |||||||| ||||| || || |||||||| |||||||| Sbjct 3759 GTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCA 3818 Query 163362 ATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAG 163418 ||| || ||||| |||| || || ||| ||| ||||| ||||| ||||| | Sbjct 3819 ATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACCTGGGCTGATATTATTAACCG 3875 Query 163419 AGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478 || |||||||||||||||||||| || ||||||||||| || ||||| || ||||| Sbjct 3876 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCT 3935 Query 163479 TGCTGCTG 163486 ||||||| Sbjct 3936 AGCTGCTG 3943 >seq3541 Length=30046 Score = 255 bits (282), Expect = 6e-63 Identities = 273/360 (76%), Gaps = 7/360 (2%) Strand=Plus/Plus Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| |||| |||| | || ||||| || |||||||||||||| |||||||| || Sbjct 15372 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 15431 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 |||||| | || || || ||||||||||| || || || || ||||||||||| ||||| Sbjct 15432 CATATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 15491 Query 163102 CTTGTTACTTCTTCTCTTATCAGAG--AAACTACTGAGCAAGAGTCACAGAACTACGGTT 163159 | || |||||| | | ||||| | ||| || | || || || | |||| Sbjct 15492 TTGGTAACTTCTAGTTTGATCAGGGGGAAA-----GAAAATGAATCTGCTAATGAAGGTT 15546 Query 163160 ATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTC 163219 | | ||||| ||||| ||| | ||||| || || || ||||||||||| |||||||| | Sbjct 15547 ACAGATTCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGCC 15606 Query 163220 GCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTG 163279 | ||||||||||| ||||| |||||||||||| |||||| | ||||||||||| |||| Sbjct 15607 GATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTG 15666 Query 163280 CATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACC 163339 | | ||||| || | |||||||||||||| | ||| | || ||||| ||||||| Sbjct 15667 CTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAACC 15726 >seq112378 Length=4714 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 7/210 (3%) Strand=Plus/Plus Query 162925 TTGGTCTATCCTTTCGGTCAAGGTTCTTTCTC-TGACGCAATGCCTCTTGGTATTTCTGG 162983 ||| |||| || | |||||||| ||| || ||| | |||||||| || |||||||| Sbjct 2497 TTGATCTACCCAATTGGTCAAGGAAGTTTTTCCTGATGGTATGCCTCTAGGAATTTCTGG 2556 Query 162984 TACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCA 163043 |||||| |||| |||| | | ||||| |||||| |||||| |||||||| || || Sbjct 2557 TACTTTCAACTTCATGATTATATTCCA-----AGCACAGCATCCT-ATGCACCCATTTCA 2610 Query 163044 TATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCT 163103 |||| | || || || ||||||||| |||| || || || |||| |||||| ||||| | Sbjct 2611 TATGTTGGGTGTAGCTGGTGTATTCAGTGGCTCCCTATTCAGTGTTATGCATGGTTCCTT 2670 Query 163104 TGTTACTTCTTCTCTTATCAGAGAAACTAC 163133 || |||||| | | ||||| ||||| || Sbjct 2671 GGTAACTTCTAGTTTGATCAGGGAAACCAC 2700 >seq8266 Length=1953 Score = 116 bits (128), Expect = 4e-21 Identities = 170/241 (71%), Gaps = 17/241 (7%) Strand=Plus/Plus Query 162583 GCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTAT---- 162638 ||||||| || | ||||| |||||||| || |||||||| ||||| |||||||| Sbjct 919 GCAACTT-CTGTTTTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 977 Query 162639 ----------CAGA--GAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTC 162686 | || ||||||||| | || || || || || || ||||| || || || Sbjct 978 GAAACCGTTTCGGATTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTC 1037 Query 162687 TGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGC 162746 ||||| | |||||| ||| ||||| ||| | ||||| || || ||||||||||| Sbjct 1038 AGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAGC 1097 Query 162747 AGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTT 162806 |||| | ||||||| ||||| || || ||||| |||| |||| | || | ||||| Sbjct 1098 AGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTT 1157 Query 162807 C 162807 | Sbjct 1158 C 1158 >seq101245 Length=1004 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/103 (81%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 163387 GTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGG---ACTT-GGTATGGAAGTTAT 163442 || ||| ||||||||| |||||| ||| | | || | |||| |||||||||||||| Sbjct 592 GTAATTAATACTTGGGCTGATATCATTAGCCGTGCGAGCTAACTTTGGTATGGAAGTTAT 651 Query 163443 GCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 652 GCATGAACGTAATGCTCAGAACTTCCCTCTAGACCTAGCTGCT 694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551765167321440