Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq452 583 3e-162 seq165807 526 7e-145 seq3541 165 2e-36 seq8266 154 4e-33 seq112378 113 1e-20 >seq452 Length=65819 Score = 583 bits (646), Expect = 3e-162 Identities = 724/987 (73%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | ||||| ||||| |||||||||||||||||||| || ||||||||||| | || Sbjct 9768 GATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 9827 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGC 17944 ||||||||| | ||||| | |||||||| ||| | || | ||| | | | | Sbjct 9828 AAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAAC 9887 Query 17945 TACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCAT 18004 |||| ||||||||||| ||||| ||||| || || |||||||| ||| ||| || | Sbjct 9888 TACA---GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAA 9944 Query 18005 AGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCT 18064 || || | ||| || | || ||||||||||| |||||||| |||| | Sbjct 9945 AGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGA 10004 Query 18065 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 18124 ||||| || |||||||| |||||||| | || |||||||| |||||||| || || || Sbjct 10005 GTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAACCATGAGCAGCTACGAT 10064 Query 18125 ATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGT 18184 |||||| || ||||| ||||| || ||| | || || | || ||| ||| || || Sbjct 10065 ATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 10124 Query 18185 CGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCC 18244 ||||| || || | ||||| || | || ||||||||| ||||| | || Sbjct 10125 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCC 10184 Query 18245 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGC 18304 |||||||| || || ||||| | |||||| || || ||||||||||| ||||| || || Sbjct 10185 GCCGAATACACCAGCTACACCTAACATATGAAATGGGTGCATAAGGATGTTGTGCTCAGC 10244 Query 18305 TTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAA 18364 |||||||| | |||||| ||||||||||| ||| || ||||||||||||||||| || Sbjct 10245 CTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAA 10304 Query 18365 ACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGG 18423 ||| ||||| |||| || || | | ||||| || | | |||||||| || || || | Sbjct 10305 ACTTCCTTGACCAATTGGGTAGATCAAGAAA-ACAGCGGTAGCAGCTGCAACAGGAGCTG 10363 Query 18424 AATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTC 18483 |||| |||||| |||||| ||||||||||| | | ||||||| ||||| | || | Sbjct 10364 AATACGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGCTCCCACTCACGAC 10423 Query 18484 CCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGT 18543 |||||||| || | || | | ||||| | ||||| |||| ||| || || |||| Sbjct 10424 CCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGT 10483 Query 18544 TATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTG 18603 | |||||||| || || | || ||| ||||||||||||||||| ||||| | |||||| | Sbjct 10484 TGTATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAG 10543 Query 18604 CGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTG 18663 | ||| | || | || || ||||| || || |||||||| || |||| | ||| | Sbjct 10544 CTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGTAGAGATCCAG 10603 Query 18664 AGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAA 18723 | ||||| |||||||||||||| || || || ||||||||||||| || ||||| | || Sbjct 10604 AAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAA 10663 Query 18724 ATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGA 18783 || | | || |||||| || | | ||||||||| | || |||||||| || | ||| | Sbjct 10664 ATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAA 10723 Query 18784 GGCGGTTGTTTGTACTCGTAACCCAGT 18810 | ||||| | ||||| || | ||||| Sbjct 10724 GACGGTTTTCGGTACTGGTTATCCAGT 10750 >seq165807 Length=4432 Score = 526 bits (582), Expect = 7e-145 Identities = 714/989 (72%), Gaps = 10/989 (1%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| ||||| |||||||||||||| || ||||||||||| | |||||||| Sbjct 3939 AGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 3880 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 3879 AGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 3822 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| ||||| |||||||||||| || || | || || Sbjct 3821 -GATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAGT 3763 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||| ||||||||||||| | | ||||| Sbjct 3762 GAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGTT 3703 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 ||| |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 3702 AAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 3643 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| |||||| | || || | || ||| ||| || || ||||| Sbjct 3642 AGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 3583 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || | || || || | | || ||||||||| ||||| | || ||||| Sbjct 3582 CCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 3523 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || || || | ||| || || || ||||||||||| ||||| || || ||||| Sbjct 3522 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 3463 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | ||| || || |||||||| || || |||||||| ||||| || ||||| || Sbjct 3462 TACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTCC 3403 Query 18371 TTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| || | ||||||| | ||||| || | || || | || || || || || ||||| Sbjct 3402 TTGACCGATTGGATAAATCAAGAAA-ACAGCAGTAGCC-GCCGCAACAGGAGCTGAATAT 3345 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| || |||||||| || | ||||||||||||| | || |||||| Sbjct 3344 GCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATG 3285 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| || | || | | ||||| | ||||| || | ||| || || ||||| ||| Sbjct 3284 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTAT 3225 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 ||||| || || | || ||| |||||||| |||||||| ||||| | || || || | Sbjct 3224 AACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCA 3165 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | || | || || || || ||||| ||||||||||| |||| | ||| || ||| Sbjct 3164 GAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACA 3105 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 || |||||||||||||| ||||| || ||||| ||||||| || || || | |||| | Sbjct 3104 GGTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACA 3045 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 | || |||||| || | | ||| ||||| | || |||||||| || | || || ||| Sbjct 3044 GAAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGG 2985 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAA 18817 || | || || || | ||| | ||| || Sbjct 2984 TTTTCAGTGCTGGTTATCCAATTACAGAA 2956 >seq3541 Length=30046 Score = 165 bits (182), Expect = 2e-36 Identities = 254/362 (70%), Gaps = 3/362 (1%) Strand=Plus/Minus Query 17979 TTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACGGGCCAAGCA 18038 || |||||||| ||| ||| || | || || | ||| || | || ||||||||| Sbjct 15724 TTGAAAGCCATGGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCA 15665 Query 18039 GCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTC 18098 || | |||||| |||| | ||||| || |||||||| |||||||| | || Sbjct 15664 GCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGG 15605 Query 18099 CCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTATAT 18158 |||||||| |||||||| || || |||||||| || | ||| ||||| || ||| | || Sbjct 15604 CCAAAGTAACCATGAGCAGCTACGATATTATAAGTTTATTCCTCTTGACCGAATCTGTAA 15545 Query 18159 CCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTT 18218 || | || ||| ||| || || | || || | ||||| || | Sbjct 15544 CCTTCATTAGCAGATTCATTTTCTTTCC---CCCTGATCAAACTAGAAGTTACCAAGGAA 15488 Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| ||||| | || |||||||| || || ||||| | |||||| || Sbjct 15487 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATATGAAAT 15428 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 || ||||||||||| ||||| || || |||||||| | |||||| ||||||||||| || Sbjct 15427 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCTATA 15368 Query 18339 AT 18340 || Sbjct 15367 AT 15366 >seq8266 Length=1953 Score = 154 bits (170), Expect = 4e-33 Identities = 224/317 (71%), Gaps = 22/317 (7%) Strand=Plus/Minus Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569 ||||| | ||||| |||| ||| || || ||||| |||||||| || || | || ||| Sbjct 1157 AAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCATTCATCAACGGATGCT 1098 Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 ||||||||||||||||| ||||| | |||||| || ||| | || | || || ||| Sbjct 1097 GCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCTGCAGAAGTAGGAATAATGGCACCT 1038 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG----------------CTC 18673 || || || |||||||| || |||| | ||| || ||||| || Sbjct 1037 GAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCAATCCGAAACGGTTTC 978 Query 18674 ACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGC 18733 |||||||||||| || || || ||||||||||||| || ||||| ||| | | || Sbjct 977 ACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAAAA----CAGAAGT 922 Query 18734 TGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTT 18793 |||||| || || | ||||||| | || |||||||| || | ||| || ||||| | Sbjct 921 TGCGGTCAATAG-GTTAGGATCATCA-AACACCAAACCATCCAATGTAAAGACGGTTTTC 864 Query 18794 TGTACTCGTAACCCAGT 18810 ||||| || | ||||| Sbjct 863 GGTACTGGTTATCCAGT 847 >seq112378 Length=4714 Score = 113 bits (124), Expect = 1e-20 Identities = 123/161 (76%), Gaps = 7/161 (4%) Strand=Plus/Minus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || |||||| || ||||| | |||| |||||| || || ||||| | |||||| || Sbjct 2664 CCATGCATAACACTGAATAGGGAGCCACTGAATACACCAGCTACACCCAACATATGAAAT 2605 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 || |||||| |||| |||| ||||||||| | |||||| ||||||||||| | Sbjct 2604 GGGTGCATA-GGATGCTGTG-----CTTGGAATATAATCATGAAGTTGAAAGTACCAGAA 2551 Query 18339 ATACCAAGAGGCATACCATCA-GAGAAACTCCCTTGTCCAA 18378 || || ||||||||||||||| || ||||| ||||| |||| Sbjct 2550 ATTCCTAGAGGCATACCATCAGGAAAAACTTCCTTGACCAA 2510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150975413770344