Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq165807 522 8e-144 seq452 509 5e-140 seq3541 192 2e-44 seq8266 93.3 1e-14 >seq165807 Length=4432 Score = 522 bits (578), Expect = 8e-144 Identities = 695/963 (72%), Gaps = 2/963 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||| || || || || || |||||||| || || | |||||||| Sbjct 3938 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3879 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| ||| ||||||||||| || || || | || | | | | | | |||| Sbjct 3878 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 3819 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | ||||||||||| || | || | |||| ||| Sbjct 3818 TGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 3759 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || |||||||| |||||||| ||||| | |||||||| | | ||| || || ||||| Sbjct 3758 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTAAAA 3699 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || ||||| || || ||||| ||||| Sbjct 3698 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 3639 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 ||||||||||||||||| ||||||| | || || | | ||| || || || | Sbjct 3638 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 3579 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| ||| ||||||||| ||| | || || ||||| Sbjct 3578 ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 3519 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || || || | ||||||||| || |||||||| || ||||||||||||||||| || Sbjct 3518 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 3459 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | ||| |||| || || || || || || | ||||| |||| |||||| || || Sbjct 3458 ATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTCCTTGA 3399 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 || | ||||||| | ||| |||||||| || || || |||||||| || || |||||| Sbjct 3398 CCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACA 3339 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || || || | |||||||||||||| || ||||||||| | Sbjct 3338 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATGTAACAA 3279 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | |||||| | || | || | | |||||||||||||| | |||| Sbjct 3278 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCAT 3219 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | || |||||||| |||||||| ||||| | || || || | | Sbjct 3218 TCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGTA 3159 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | ||| || || ||||| ||||| ||||| | || || |||| || ||||| Sbjct 3158 GGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 3099 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370 || || ||||| ||||| || || || || ||| || ||||||||||| || || Sbjct 3098 CGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTT 3039 Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATT 22429 |||| ||| | | | |||||||| | || || |||||||| | |||||||||||| | Sbjct 3038 GCGGTCAATAAAGTA-GGAATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTTC 2980 Query 22430 AGT 22432 ||| Sbjct 2979 AGT 2977 >seq452 Length=65819 Score = 509 bits (564), Expect = 5e-140 Identities = 700/976 (72%), Gaps = 2/976 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 9775 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 9834 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||| | || |||||||| || || || || | || | | | | | | |||| Sbjct 9835 GCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGAT 9894 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | ||||||||||||||| | || | |||| ||| Sbjct 9895 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTGAAC 9954 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || |||||||| |||||||| ||||| | ||||| || | ||| || || || || Sbjct 9955 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAA 10014 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || ||||| || || |||||||| || ||||| ||||| Sbjct 10015 CTAGCATATTGGAAGATCAATCGGCCAAAGTAACCATGAGCAGCTACGATATTATAAGTT 10074 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 |||||||||||||| || ||||||| | || || | | ||| || || || | Sbjct 10075 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 10134 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| ||||||||| ||| | || || ||||| Sbjct 10135 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 10194 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| | ||| ||||| || |||||||| || ||||||||||||||||| || Sbjct 10195 CCAGCTACACCTAACATATGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 10254 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | |||| ||||||| || || || || || | |||||| ||||||||||| || || Sbjct 10255 ATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 10314 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 |||| || || | | ||| ||||| || ||||| || |||||||| || ||||||||| Sbjct 10315 CCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATACGCAACA 10374 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || | || | ||||| |||||||| || ||||||||| | Sbjct 10375 GCAATCCAAGGGCGCATACCCAAACGGAAACTAAGCTCCCACTCACGACCCATGTAACAA 10434 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | |||||| | || | |||| | ||||| |||||||| | |||| Sbjct 10435 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCAT 10494 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | || |||||||| |||||||| ||||| | ||||| || | | Sbjct 10495 TCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCTGCAGAAGTA 10554 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | ||| ||||| || || ||||| || || | || || |||| || ||||| Sbjct 10555 GGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 10614 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370 || || ||||| || || || || || || ||| ||||| |||||||| || || Sbjct 10615 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTT 10674 Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATT 22429 |||| ||| ||| | || ||||| | || || |||||||| | ||||||||||| | Sbjct 10675 GCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 10733 Query 22430 AGTAGAGGTGACCCAG 22445 ||| ||| | |||| Sbjct 10734 GGTACTGGTTATCCAG 10749 >seq3541 Length=30046 Score = 192 bits (212), Expect = 2e-44 Identities = 257/357 (72%), Gaps = 3/357 (1%) Strand=Plus/Minus Query 21614 GTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGC 21673 ||||||||||||||| | || | |||| ||||| |||||||| |||||||| || Sbjct 15725 GTTGAAAGCCATGGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGC 15666 Query 21674 AGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCG 21733 ||| || ||||| || | ||| || || || || ||||||||||||||||| | || Sbjct 15665 AGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCG 15606 Query 21734 ACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTA 21793 ||||| || || |||||||| || ||||| ||||| | |||||||||||| || |||| Sbjct 15605 GCCAAAGTAACCATGAGCAGCTACGATATTATAAGTTTATTCCTCTTGACCGAATCTGTA 15546 Query 21794 ACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCT 21853 ||| | || || | | ||| || | | || | || || |||| | Sbjct 15545 ACCTTCATTAGCAGATTCATTTTC---TTTCCCCCTGATCAAACTAGAAGTTACCAAGGA 15489 Query 21854 ACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAA 21913 ||| ||||||||| ||| | || || ||||| || || ||||| | ||| ||||| Sbjct 15488 ACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATATGAAA 15429 Query 21914 AGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCC 21970 || |||||||| || ||||||||||||||||| || | |||| ||||||| || || Sbjct 15428 TGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACC 15372 >seq8266 Length=1953 Score = 93.3 bits (102), Expect = 1e-14 Identities = 228/343 (66%), Gaps = 22/343 (6%) Strand=Plus/Minus Query 22119 CCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCG 22178 ||||||||| | || |||| | |||||| | || | |||| | ||||| ||| Sbjct 1184 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCG 1125 Query 22179 TTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATG 22238 ||||| | ||||||||||| | || |||||||| |||||||| ||||| | ||||| Sbjct 1124 TTGTATAACCATTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGATA 1065 Query 22239 GCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCA 22298 || | | |||| | ||| ||||| || || ||||| || || | || || ||| Sbjct 1064 GCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGTAGAGATCCA 1005 Query 22299 G--------------CG--ACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCC 22342 | || |||| ||| || || ||||| || || || || || || | Sbjct 1004 GAAACAGGTTCAATCCGAAACGGTTTCACGAATACCATCAATATCTACTGGAGGAGCAGC 945 Query 22343 AACAAAGGCGATAATAAAACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCC 22402 || ||||| |||||||| || || |||| | ||| || ||||| | || || Sbjct 944 AATGAAGGC---AATAAAAC-AGAAGTTGCGGTCAATAGGTTAGG-ATCATCA-AACACC 891 Query 22403 GAACCATCCTACATAAAGACGGTTATTAGTAGAGGTGACCCAG 22445 |||||||| | ||||||||||| | ||| ||| | |||| Sbjct 890 AAACCATCCAATGTAAAGACGGTTTTCGGTACTGGTTATCCAG 848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145876597271280