Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq21692 136 5e-27 seq87019 120 4e-22 seq42153 104 3e-17 seq26386 95.1 1e-14 seq115059 84.2 3e-11 seq136600 82.4 9e-11 >seq21692 Length=6131 Score = 136 bits (150), Expect = 5e-27 Identities = 230/333 (69%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || |||||| | || ||| || || || |||||| || ||| || ||| Sbjct 3232 CCGGGTACAGGGAAGACCTTGCTAGCCAAGGCTATTGCTGGTGAAGCAGGTGTACCTTTC 3173 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || | || | | | ||||| ||||||||||||||||| || || |||||| Sbjct 3172 TTCTCGATTTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGAGCTTCAAGGGTC 3113 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 ||||| || || | | || ||||| ||||||||||| || ||||||| ||| Sbjct 3112 CGCGACCTTTTCAAGAAAGCAAAGGAAAACGCCCCATGTATTGTGTTTGTTGATGAAATT 3053 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || ||| | | ||||| | || ||||||||||||||||| Sbjct 3052 GATGCTGTTGGGCGTCAAAGAGGAACTGGTATTGGTGGAGGGAATGACGAGAGAGAACAG 2993 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTT 175614 ||| | || || || | || || |||||||||||||| | | ||||| | | || Sbjct 2992 ACACTCAACCAGCTCTTGACAGAAATGGATGGCTTTGAAGGTAACACTGGTGTGATTGTA 2933 Query 175615 ATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 ||||| || |||||||| | ||||| |||||| Sbjct 2932 ATTGCAGCAACTAATCGTGCAGATATTCTTGAT 2900 >seq87019 Length=1933 Score = 120 bits (132), Expect = 4e-22 Identities = 295/442 (67%), Gaps = 14/442 (3%) Strand=Plus/Minus Query 76501 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 76560 ||||||||| || || |||||||| || ||||| || ||| | || || ||||| || Sbjct 784 TCTTTTGATAGCCCCCATGCCAACTGCATCCACTAGTCAGATCCTCGGAAACAATGAGTG 725 Query 76561 CTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCAT 76620 |||||||||||| ||| |||| || ||| | ||| || ||||| ||| | | Sbjct 724 CTTTGAACCATATACATCAAATATATACAGCCGCAGAGTTCTAAGTGGTGAATTTATTGT 665 Query 76621 TGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAA 76680 || ||||||||||| | |||||||||| |||| ||||| ||| | || | || Sbjct 664 GGTGAACAAGCACCTTTTGAATGACCTCACAGAGATGGGTCTGTGGACTCCTGACCTAAA 605 Query 76681 GGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGAT---ATCCCAGATGA 76737 || || | | ||| || |||||| | || |||| || || |||| Sbjct 604 AAATGCAATTATTTACCATAATGGCTCTATTCAACAGAT---AGATTCCATTCCGGATGG 548 Query 76738 TATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAG--ATGAAAGATGTCATTGACATG 76795 |||| ||||| | ||||||||||| || ||| | |||| | | | || ||| Sbjct 547 ACTCAAAGCCATCTACAGGACAGTGTGGGAGATTAAGCAACGAAACA--TAGTAGATATG 490 Query 76796 GCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTC--ATGGAAA 76853 || ||||| | || |||||||||||||||| || || | || ||||| ||||| Sbjct 489 GCAGCAGACAGAGGCTGCTTCATTGATCAAAGCCAGAGCTTAAA--TATTCATATGGACC 432 Query 76854 GTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAA 76913 |||| | ||| | |||| ||||| | || || ||| |||| | |||| Sbjct 431 AACCAAATTTTGGCAAATTAACTTCCTTGCATTTCTATGCTTGGTCCAAGGGATTAAAAA 372 Query 76914 CCGGAATGTACTATCTCCGATC 76935 ||||||||||||| || |||| Sbjct 371 CCGGAATGTACTACCTTAGATC 350 >seq42153 Length=9390 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||| ||| | | |||| || ||||| || || || ||||||||||||||| ||| Sbjct 5010 TTCGCGGAGAGGTTGGTTGCCTTCGCGTGCGTTGAAGGGATCTTCTTCTCCGGGAGCTTC 4951 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||||| |||| |||| |||||||||| ||||||||||| || || || || |||||| Sbjct 4950 TGCGCCATTTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGGCTGACGTTTTCGAATGAA 4891 Query 65191 CTTATTTCCCGAGATGAGGG 65210 | || || ||||||| || Sbjct 4890 TTGATCTCGAGAGATGAAGG 4871 >seq26386 Length=13841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 252/380 (66%), Gaps = 9/380 (2%) Strand=Plus/Minus Query 175215 CAAAGATGAACTTG-AAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAA 175273 ||||| || | ||| |||| | |||||||| | || | || || | ||| || | Sbjct 2091 CAAAGCTGGAGTTGCAAGAAGTGGTGGATTTCTTGAAAAACCCAGATAAATACACTGCAT 2032 Query 175274 GTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCC 175333 ||||| |||||||| ||| |||| | | |||| || || ||||| ||||||| Sbjct 2031 TGGGTGCAAAGATCCCTAAAGGTTGCCTTTTGGTGGGTCCACCTGGCACGGGGAAGACCC 1972 Query 175334 TCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAA 175393 | | || | || | || || ||| | || || ||| || || | || | Sbjct 1971 TATTGGCTAGGGCGGTGGCCGGAGAAGCCGGGGTGCCGTTCTTCTCATGTGCAGCTTCGG 1912 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 | || |||||| |||| || || ||||| || || || | ||| | || || | | Sbjct 1911 AGTTCGTGGAGCTGTTCGTGGGAGTGGGAGCTTCGAGAGTGAGGGATTTGTTCGAGAAGG 1852 Query 175454 CCC--GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCA 175511 | |||||| ||| || ||||| |||||||||||||||||||| ||||| | ||| Sbjct 1851 CGAAGGCGAAAGC--ACCTTGCATTGTGTTCATTGATGAGATTGATGCTGTGGGGAGGCA 1794 Query 175512 ACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 | | ||||| ||| | | | ||||| |||||||| || || |||||||| || Sbjct 1793 GAGAGGGGCTGGGATGGGAGG--TGGGAATGATGAGAGAGAGCAGACTATTAATCAGCTC 1736 Query 175570 CTCACCGAGATGGATGGCTT 175589 | || || |||||||| || Sbjct 1735 TTGACTGAAATGGATGGATT 1716 >seq115059 Length=565 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 76511 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCA 76570 || ||||||||||| || || || || || | || || ||||| ||||||||||| Sbjct 88 GCTCCAATGCCAACTGCTTCAACAAGCCAGATTCTTGGCAACAATGAGTGCTTTGAACCG 147 Query 76571 TACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAG 76630 |||||| ||||||| || |||||| | ||||||||||| ||||||||||| Sbjct 148 TACACATCAAACATTTATAGCAGAAGAGTTTTAAGTGGTGAGTTTGTAGTTGTCAACAAG 207 Query 76631 CACCTCGTCAATGACCTCA 76649 ||||| | || || |||| Sbjct 208 CACCTTCTTAACGATCTCA 226 >seq136600 Length=929 Score = 82.4 bits (90), Expect = 9e-11 Identities = 203/308 (66%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| | | | || ||||||||| |||| ||||| || | | ||||| | || Sbjct 565 CGAGACTTTTACTATGATTACTTTGGATTCAAGACCCTGGAAAGGTCTTATCTACTGAGG 624 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || |||| | | |||||| || ||| ||||||| ||| |||| | | || || Sbjct 625 ATCAATGGGAAGGTAGTGGAAAGGCCTCAGCACATGTTAATGAGGGTTTCTGTTGGTATT 684 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 || || | ||||| ||| | | || || | | ||||||||||| |||| Sbjct 685 CATAAAGACAATATTGACGCTGCCATCCGTACCTATCATACAATGTCCCAAGGCTGGTTC 744 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | ||| || | || || || ||||||||||| || ||||| ||| || ||||||| Sbjct 745 ACTCATGCCTCGCCTACTCTTTTCAATGCTGGAACGTGTAGACCTCAGTTGAGCAGTTGC 804 Query 75368 TTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 75427 ||||| | | || ||||| || | |||||||| | ||||| | ||| ||| Sbjct 805 TTCCTCCTGTGTATGAAAGAGGATAGCATTGAGGGTATCTACGACACTCTAAAGGAATGT 864 Query 75428 GCGCAAAT 75435 || |||| Sbjct 865 GCAGAAAT 872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595146214762880