Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq452 545 3e-150 seq165807 524 9e-144 seq3541 228 1e-54 seq112378 140 4e-28 >seq452 Length=65819 Score = 545 bits (604), Expect = 3e-150 Identities = 713/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 9775 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 9834 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | || | | |||||| || ||| Sbjct 9835 GCACGGTTGATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACAGAT 9894 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || ||||| || ||||| |||| ||||| | || ||| ||| Sbjct 9895 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTGAAC 9954 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | || ||| || || | | ||| | ||||||||| | | | |||||| ||| Sbjct 9955 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAA 10014 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| |||||||| |||| |||||||| ||||||||||| || |||||||| || Sbjct 10015 CTA-GCATATTGGAAGATCAATCGGCCAAAGTAACCATGAGCAGCTACGATATTATAAGT 10073 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 ||||| |||||||| || | ||||| | || ||| || | ||| || || || || Sbjct 10074 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 10133 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 10134 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATAC 10193 Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| ||||| ||| |||||| || || |||||||| ||||| ||||| || |||||||| Sbjct 10194 ACCAGCTACACCTAACATATGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 10253 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 | ||||||||| || ||||||||||| ||||||||||| |||||||| || || || Sbjct 10254 AATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 10313 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 ||||| ||| || | ||||| || ||| |||||| | || ||||| ||| || || Sbjct 10314 ACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATACGCAAC 10373 Query 8490 ACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGC 8549 | ||||| || | |||||| || ||| | | |||||||| | |||||||||| Sbjct 10374 AGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGCTCCCACTCACGACCCATGTAACA 10433 Query 8550 AGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCA 8609 || | |||| | |||||| | | || | | ||| ||||| ||||| || ||||| Sbjct 10434 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCA 10493 Query 8610 CTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGA 8669 ||||| | | || |||||||| || || || ||||| || || ||||| |||| Sbjct 10494 TTCATCAACGGATGCTGCTTCCCAGATTGGGTAAAAGTGCAAACCGATAGCTGCAGAAGT 10553 Query 8670 TGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTC 8729 |||| | ||||| || || || |||||||| || | | || || | ||||||||| Sbjct 10554 AGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTC 10613 Query 8730 ACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGC 8789 ||||||||| || ||||| || || ||||||||||| || || | ||||| || || Sbjct 10614 ACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGT 10673 Query 8790 AGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTT 8849 || | || ||| ||| ||||| | ||| |||||||| || | ||||| | ||| | Sbjct 10674 TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 10733 Query 8850 TGTACTTGTAACCCACTCGCAAAA 8873 ||||| || | ||| | ||| || Sbjct 10734 GGTACTGGTTATCCAGTTGCAGAA 10757 >seq165807 Length=4432 Score = 524 bits (580), Expect = 9e-144 Identities = 703/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||| || || ||||| | ||||||||||||||||||||| | ||| Sbjct 3938 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3879 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008 || | ||| ||||| ||| |||| ||| ||| | ||| | | |||||| || | Sbjct 3878 GCACGGTTAATAATA--TCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAG 3821 Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068 ||||||| || || || || || || || || ||||| |||| |||||| | || ||| | Sbjct 3820 ATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAGTGA 3761 Query 8069 ACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAA 8128 |||| | || ||| || || | | ||| | |||||| || | | | | |||||||| Sbjct 3760 ACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTAA 3701 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 | ||||| |||||||| |||| ||||| || |||||||| || || |||||||| | Sbjct 3700 AACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAG 3641 Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTC 8248 | ||||| ||||||||||| | ||||| | || ||| || | ||| || || || | Sbjct 3640 TTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCC 3581 Query 8249 TGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACA 8308 |||| | | ||| || || |||||||| |||||||||||||| || || || ||||| | Sbjct 3580 TGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATA 3521 Query 8309 TACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATA 8368 ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || ||||||| Sbjct 3520 CACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA 3461 Query 8369 CGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCT 8428 | | ||| |||||||| |||||||| || ||||||||||| ||||| || || || | Sbjct 3460 CAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTCCTT 3401 Query 8429 GACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTA 8488 |||| | |||||| | ||||| || || ||| || | || ||||| |||||| | Sbjct 3400 GACCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAA 3341 Query 8489 CACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAG 8548 || ||||| || | |||||| | ||| | | ||||||| | ||||||||| Sbjct 3340 CAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGCCCCATGTAAC 3281 Query 8549 CAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACC 8608 || | |||| | |||||| | | || | || ||| ||||| ||||| || |||| Sbjct 3280 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACC 3221 Query 8609 ACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAG 8668 | ||||| | | || |||||||| || || || ||||| || || ||||| |||| Sbjct 3220 ATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAG 3161 Query 8669 ATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTT 8728 |||| | |||||||| ||||| ||||||||||| | | || || | |||||||| Sbjct 3160 TAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTT 3101 Query 8729 CACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAG 8788 |||||||||| || || || || || || |||||||| || || | ||||| || || Sbjct 3100 CACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAG 3041 Query 8789 CAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGT 8848 || | || || ||||||||| | ||| |||||||| || | |||||| | ||| | Sbjct 3040 TTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTT 2981 Query 8849 TTGTACTTGTAACCCA 8864 || || || | ||| Sbjct 2980 CAGTGCTGGTTATCCA 2965 >seq3541 Length=30046 Score = 228 bits (252), Expect = 1e-54 Identities = 268/359 (75%), Gaps = 5/359 (1%) Strand=Plus/Minus Query 8033 GGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATG 8092 |||| || ||||| |||| ||||| | || ||| ||||| | || ||| || || | | Sbjct 15726 GGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAG 15667 Query 8093 TAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGCATACTGGAAGATTAAT 8151 ||| ||||||||||| | | | |||||| |||| | ||||| |||||||| ||| Sbjct 15666 CAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTTGAAACTA-GCATATTGGAAGATCAAT 15608 Query 8152 CTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTA 8211 | |||||||| ||||||||||| || |||||||| || | ||| |||||||| || | Sbjct 15607 CGGCCAAAGTAACCATGAGCAGCTACGATATTATAAGTTTATTCCTCTTGACCGAATCTG 15548 Query 8212 TAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAA 8271 ||||| | || ||| || | ||| | || | ||||| | | ||| || || || Sbjct 15547 TAACCTTCATTAGCAGATTCATTTTC---TTTCCCCCTGATCAAACTAGAAGTTACCAAG 15491 Query 8272 GAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGG 8331 ||||| |||||||||||||| || || || ||||| | ||| ||||| ||| |||||| Sbjct 15490 GAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATATGA 15431 Query 8332 AAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACC 8390 || || |||||||| ||||| ||||| || |||||||| | ||||||||| || ||||| Sbjct 15430 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACC 15372 >seq112378 Length=4714 Score = 140 bits (154), Expect = 4e-28 Identities = 176/241 (73%), Gaps = 7/241 (3%) Strand=Plus/Minus Query 8202 ACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGA 8261 ||| || || ||||| | || ||| || | || || || || ||||| | | ||| Sbjct 2737 ACCGAATTTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTCCCTGATCAAACTAGA 2678 Query 8262 TGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCC 8321 || || || ||||| |||||| ||||||| || || |||| ||| | ||| ||||| || Sbjct 2677 AGTTACCAAGGAACCATGCATAACACTGAATAGGGAGCCACTGAATACACCAGCTACACC 2618 Query 8322 TGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTT 8381 |||||| || || |||||| || |||| ||||||||||| | ||||||||| Sbjct 2617 CAACATATGAAATGGGTGCATAGGA------TGCTGTGCTTGGAATATAATCATGAAGTT 2564 Query 8382 AAACGTACCAGAAATACCTAGAGGCATTCCATCA-GAGAATGAACCCTGACCAAATGGAT 8440 || ||||||||||| ||||||||||| |||||| || || || ||||||| ||| | Sbjct 2563 GAAAGTACCAGAAATTCCTAGAGGCATACCATCAGGAAAAACTTCCTTGACCAATTGGGT 2504 Query 8441 A 8441 | Sbjct 2503 A 2503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614392983106720