Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq165807 522 8e-144 seq452 509 5e-140 seq3541 192 2e-44 seq8266 93.3 1e-14 >seq165807 Length=4432 Score = 522 bits (578), Expect = 8e-144 Identities = 695/963 (72%), Gaps = 2/963 (0%) Strand=Plus/Plus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313 ||| | |||||||||||| | |||||||| || || | |||||||| | | | ||| | Sbjct 2977 ACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCC-TACTTTATTGAC 3035 Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373 ||| || || ||||||||||| || ||| || || || || ||||| ||||| || Sbjct 3036 CGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTAT 3095 Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433 || ||||| || |||| || || | ||||| ||||| ||||| || || ||| | | Sbjct 3096 TCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTAT 3155 Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493 ||| | | || || || | ||||| |||||||| |||||||| || | |||| Sbjct 3156 TCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGA 3215 Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553 ||||||| | |||||||||||||| | | || | || | |||||| | |||| || Sbjct 3216 TGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 3275 Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 | ||||||||| || |||||||||||||| | || || || ||| | || ||||| Sbjct 3276 AGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 3335 Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTT 41673 |||||| || || |||||||| || || || |||||||| ||| | ||||||| | Sbjct 3336 TGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAAT 3395 Query 41674 TGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACAT 41733 || || || |||||| |||| ||||| | || || || || || || |||| || Sbjct 3396 CGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTAT 3455 Query 41734 GCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGC 41793 | | || ||||||||||||||||| || |||||||| || ||||||||| | || || || Sbjct 3456 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGC 3515 Query 41794 CGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACT 41853 || ||||| || || | ||| ||||||||| ||| |||| || || | Sbjct 3516 TGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTT 3575 Query 41854 CATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGA 41913 || | || || || ||| | | || || | ||||||| |||||||||||||| Sbjct 3576 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGA 3635 Query 41914 AGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGC 41973 ||| ||||| ||||| || || ||||| || |||||||| || | |||||||||||||| Sbjct 3636 AGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 3695 Query 41974 TAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTAT 42033 ||| ||||| || || ||| | | |||||||| | ||||| |||||||| |||||||| Sbjct 3696 TAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTAT 3755 Query 42034 TTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAA 42093 ||||| |||| | || | || ||||||||||| | ||||||||||| || || Sbjct 3756 CTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAA 3815 Query 42094 CCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCG 42153 ||||||| | | | | | | || | || || || ||||||||||| ||| ||||||| Sbjct 3816 CCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCG 3875 Query 42154 TGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCT 42213 ||| |||||||| | || || |||||||| || || || || || ||||| || ||||| Sbjct 3876 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCT 3935 Query 42214 TGC 42216 || Sbjct 3936 AGC 3938 >seq452 Length=65819 Score = 509 bits (564), Expect = 5e-140 Identities = 700/976 (72%), Gaps = 2/976 (0%) Strand=Plus/Minus Query 41242 CTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCC 41301 |||| | ||| ||| | ||||||||||| | |||||||| || || | ||||| || Sbjct 10749 CTGGATAACCAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC 10690 Query 41302 GTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTG 41360 | ||| ||| |||| || || |||||||| ||||| ||| || || || || | Sbjct 10689 -TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAG 10631 Query 41361 ACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATAT 41420 | || ||||| || || ||||| || |||| || || | || || ||||| || || | Sbjct 10630 ATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTT 10571 Query 41421 CAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAG 41480 |||| ||| | |||| | | || ||||| | ||||| |||||||| ||||||| Sbjct 10570 CAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAG 10511 Query 41481 CTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACT 41540 | || | ||||||||||| | |||||||| ||||| | |||| | || | |||| Sbjct 10510 CAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACT 10451 Query 41541 TCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGA 41600 || | |||| || | ||||||||| || |||||||| ||||| | || | || | Sbjct 10450 TCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTTTGGGTA 10391 Query 41601 TGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCC 41660 || | || ||||| ||||||||| || |||||||| || ||||| || ||||| ||| Sbjct 10390 TGCGCCCTTGGATTGCTGTTGCGTATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCT 10331 Query 41661 TTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCA 41720 | | || || |||| || || ||||||||||| |||||| | || || || || | Sbjct 10330 TGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTA 10271 Query 41721 CCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACA 41780 | ||||||| |||| | || ||||||||||||||||| || |||||||| || ||||| | Sbjct 10270 CTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATA 10211 Query 41781 TGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGG 41840 || | ||||| || || ||||| || || | ||| ||||||||| ||| | ||| Sbjct 10210 TGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGG 10151 Query 41841 TCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGT 41900 | || || | || | || || || ||| | | || || | ||||||| | Sbjct 10150 TAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGAT 10091 Query 41901 TTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTA 41960 | |||||||||||||| ||||| ||||| || |||||||| || || ||||| || | | Sbjct 10090 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGCCGATTGA 10031 Query 41961 TCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGC 42020 |||||||||||||||| || || || || ||| | || ||||| | ||||| |||| Sbjct 10030 TCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGC 9971 Query 42021 CTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATG 42080 |||| |||||||| ||||| |||| | || | ||||||||||||||| | |||| Sbjct 9970 CTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAACCTAAATG 9911 Query 42081 GTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTG 42140 ||||||| || ||||||||| | | | | | | || | || || || || ||||||| Sbjct 9910 GTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTG 9851 Query 42141 ACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACT 42200 | || | |||||||| |||||||| | || || |||||||| || || || || |||| Sbjct 9850 ATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACT 9791 Query 42201 TCCCGCTTGACCTTGC 42216 |||| || ||||| || Sbjct 9790 TCCCTCTAGACCTAGC 9775 >seq3541 Length=30046 Score = 192 bits (212), Expect = 2e-44 Identities = 257/357 (72%), Gaps = 3/357 (1%) Strand=Plus/Plus Query 41717 GGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTT 41776 || || ||||||| |||| | || ||||||||||||||||| || |||||||| || ||| Sbjct 15372 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 15431 Query 41777 CACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGC 41836 || ||| | ||||| || || ||||| || || | ||| ||||||||| ||| | Sbjct 15432 CATATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 15491 Query 41837 CTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTAC 41896 |||| || || | || | | || ||| | | || || | |||||| Sbjct 15492 TTGGTAACTTCTAGTTTGATCAGGGGGAAA---GAAAATGAATCTGCTAATGAAGGTTAC 15548 Query 41897 AAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGG 41956 | || |||||||||||| | ||||| ||||| || |||||||| || || ||||| || Sbjct 15549 AGATTCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATGGTTACTTTGGCCGA 15608 Query 41957 CTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCC 42016 | ||||||||||||||||| || || || || ||| | || ||||| || ||||| Sbjct 15609 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCT 15668 Query 42017 TGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAAC 42073 |||||||| |||||||| ||||| |||| | || | ||||||||||||||| Sbjct 15669 TGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACCATGGCTTTCAAC 15725 >seq8266 Length=1953 Score = 93.3 bits (102), Expect = 1e-14 Identities = 228/343 (66%), Gaps = 22/343 (6%) Strand=Plus/Plus Query 41242 CTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCC 41301 |||| | ||| ||| | ||||||||||| | |||||||| || || | ||||| || Sbjct 848 CTGGATAACCAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTT-TGATGAT-CC 905 Query 41302 GTGCCTCCTTGCCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGA 41361 ||| | |||| || || |||||||| ||||| ||| || || || || || Sbjct 906 TAACCTATTGACCGCAACTTCT-GTTTTATT---GCCTTCATTGCTGCTCCTCCAGTAGA 961 Query 41362 CATCGATGGAATCCGAGAACCCGT--CG--------------CTGGCTCCCTGTTGTATG 41405 || ||||| || || ||| |||| || |||| || || | || | Sbjct 962 TATTGATGGTATTCGTGAAACCGTTTCGGATTGAACCTGTTTCTGGATCTCTACTTTACG 1021 Query 41406 GTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCT 41465 | ||||| || || ||||| ||| | |||| | | || ||||| | ||||| | Sbjct 1022 GAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTT 1081 Query 41466 ACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAAC 41525 ||||||| |||||||| || | ||||||||||| | |||||||| ||||| | ||| Sbjct 1082 ACCCAATCTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAAC 1141 Query 41526 TCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGG 41568 | | || | |||||| | |||| || | ||||||||| Sbjct 1142 TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGG 1184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145882982764704